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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
2
accessible chromatin
2
chromatin state
Annotation Category
5
Genetic variant effects
4
cis-regulatory elements
2
Gene expression levels
2
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
2
bed bed9
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
105
monocyte
36
CD8-positive, alpha-beta T cell
34
neural progenitor cell
29
kidney
28
heart
28
retina
24
brain
23
stomach
22
A549
20
breast cancer cell
20
fibroblast
20
pigmented layer of retina
18
B cell
18
endothelial cell
18
placenta
16
embryonic stem cell
16
muscle of arm
16
muscle of leg
16
small intestine
15
adrenal gland
15
hepatocyte
15
lung
15
macrophage
14
adipocyte
14
large intestine
14
liver
13
muscle of back
13
retinal pigment epithelial cell
12
HepG2
12
T cell
12
common myeloid progenitor, CD34-positive
12
excitatory neuron
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
12
thymus
11
K562
11
MCF-7
11
endothelial cell of hepatic sinusoid
11
islet of Langerhans
11
keratinocyte
11
pericyte cell
11
right lung
11
spinal cord
10
EndoC_BH1
10
Rhabdomyosarcoma
10
gastric cancer cell
10
heart left ventricle
10
osteoblast
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
pancreas
9
renal pelvis
9
right kidney
9
smooth muscle cell
8
astrocyte
8
cardiac muscle cell
8
endothelial cell of umbilical vein
8
natural killer cell
8
pancreatic beta cell
8
regulatory T cell
8
renal cortex interstitium
8
spleen
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
T-cell acute lymphoblastic leukemia
7
acute myeloid leukemia
7
chondrocyte
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
foreskin fibroblast
7
left kidney
7
mature neutrophil
7
pancreatic acinar cell
7
skeletal muscle myoblast
6
Chondroid Chordoma
6
GM12878
6
H1-hESC
6
Rh-4 cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
bronchial epithelial cell
6
caudate nucleus
6
foreskin keratinocyte
6
hESC cell
6
left cardiac atrium
6
mammary epithelial cell
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
neuronal stem cell
6
prostate gland
6
skeletal muscle satellite cell
6
tibial artery
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HEK293
5
HL-60
5
IMR-90
5
Jurkat
5
KARPAS-422 cell
5
NAMALWA cell
5
NT2-D1 cell
5
RS4-11 cell
5
SK-N-MC
5
Th1 cell
5
coronary artery
5
epithelial cell of prostate
5
hepatic stellate cell
5
lymphoblastoid cell line
5
mesenchymal stem cell
5
midbrain
5
osteosarcoma
5
prostate cancer cell line
5
temporal lobe
5
tibial nerve
5
upper lobe of left lung
4
22Rv1
4
B-lymphocyte
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
CD4-positive, alpha-beta T cell
4
CMK
4
COLO205
4
GM12875
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HT-29
4
HeLa-S3
4
HuH-7
4
LHCN-M2
4
LoVo cell
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
PC-3
4
PC-9
4
Peyer's patch
4
RPMI8226
4
RWPE1
4
SAEC
4
SK-N-DZ
4
SK-N-SH_RA
4
SW480
4
T-47D cell
4
T-helper 17 cell
4
T-helper 2 cell
4
U-266 cell
4
U2OS
4
WERI-Rb-1
4
WI-38 cell
4
acute myeloid leukemia cell
4
adipose-derived stem cell
4
aorta
4
aortic endothelial cell
4
ascending aorta
4
choroid plexus epithelial cell
4
diffuse large B-cell lymphoma
4
endodermal cell
4
erythroid cell
4
esophageal squamous cell carcinoma
4
fibroblast of lung
4
fibroblast of villous mesenchyme
4
mononuclear cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
pulmonary artery endothelial cell
4
putamen
4
sigmoid colon
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
testis
Organ
4
adipose tissue
4
connective tissue
Life stage
4
adult
Date released
2
September, 2022
1
January, 2020
1
September, 2018
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
Showing 4 of 4 results
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Download
FileSet
DSR895SUM
released
Annotation file set
: Chromatin states for BSS01394 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR486UUL
released
Annotation file set
: Chromatin states for BSS01393 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR809PGU
released
Annotation file set
: Accessible chromatin annotation of adipose omental fat pad from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR419KCH
released
Annotation file set
: ATAC-seq sites in omental fat pad for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP