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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
gene expression
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
RNA-seq
1
scRNA-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bam
1
bed gappedPeak
1
bigWig
1
tsv
1
xls
File set status
4
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
128
monocyte
90
heart
84
stomach
73
brain
68
lung
67
muscle of arm
66
kidney
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
H1-hESC
52
left lung
51
neural progenitor cell
47
thymus
45
liver
45
right lung
44
CD8-positive, alpha-beta T cell
43
hematopoietic multipotent progenitor cell
42
right kidney
41
islet of Langerhans
40
renal cortex interstitium
40
renal pelvis
40
retina
39
B cell
39
K562
36
left kidney
34
heart left ventricle
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
30
adipose tissue
26
regulatory T cell
25
MCF-7
25
tibial nerve
23
T-helper 1 cell
23
body of pancreas
23
hepatocyte
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
sigmoid colon
21
EndoC_BH1
21
caudate nucleus
21
pancreas
20
T-helper 17 cell
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
20
trophoblast cell
19
coronary artery
19
heart right ventricle
19
ovary
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
foreskin fibroblast
18
natural killer cell
18
subcutaneous adipose tissue
18
tibial artery
17
T-helper 2 cell
17
embryonic stem cell
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
omental fat pad
17
substantia nigra
17
testis
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
chorionic villus
16
muscle of trunk
16
osteoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
HepG2
15
ascending aorta
15
cardiac muscle cell
15
cerebellum
15
frontal cortex
15
layer of hippocampus
15
neutrophil
15
retinal pigment epithelial cell
14
GM12878
14
H9
14
T cell
14
endocrine pancreas
14
mesenchymal stem cell
14
prostate gland
14
putamen
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
adipocyte
13
aorta
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
keratinocyte
13
mammary gland epithelial cell
13
neurosphere
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
temporal lobe
11
fibroblast of dermis
11
left renal pelvis
11
macrophage
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lymphocyte
10
mammary epithelial cell
10
pancreatic ductal cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endothelial cell
esophagus
9
hepatic stellate cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
NAMALWA cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
induced pluripotent stem cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
mesendoderm
7
renal cortical epithelial cell
7
right lobe of liver
7
skeletal muscle satellite cell
7
skin fibroblast
6
Brodmann (1909) area 46
6
Chondroid Chordoma
Organ
4
epithelium
4
pancreas
Life stage
2
adult
1
unknown
Date released
1
August, 2018
1
May, 2021
1
October, 2019
1
September, 2022
Software used
2
macs
2
r
Lab
11
Kyle Gaulton, UCSD
4
AMP-T2D consortium
2
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
biosample_term_name!
esophagus
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR542DMU
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of pancreatic alpha cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR110QWS
released
Annotation file set
: pancreatic alpha cell TPM gene expreassion matrix and statistic summary from scRNA-seq publications for non-diabetic adults
Lab:
AMP-T2D consortium
Project:
AMP