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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
1
bigBed narrowPeak
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
6
fibroblast
6
hepatocyte
4
endothelial cell
4
endothelial cell of hepatic sinusoid
4
pancreatic ductal cell
4
skeletal muscle fiber
3
Schwann cell
3
adipocyte
3
enterocyte
3
macrophage
3
myofibroblast cell
3
pancreatic acinar cell
3
smooth muscle cell
2
T cell
2
adipose-derived stem cell
2
basal cell
2
differentiating adipose-derived stem cell
2
epithelial cell of esophagus
2
goblet cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
vascular associated smooth muscle cell
1
CD4-positive helper T cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cortical cell of adrenal gland
1
glial cell
1
granulosa cell
1
keratinocyte
1
leukocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesenchymal stem cell
1
mesothelial cell
1
neural cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pigmented layer of retina
1
preadipocyte
1
skeletal muscle satellite cell
1
thyroid follicular cell
1
tissue-resident macrophage
1
type B pancreatic cell
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
3
February, 2024
3
June, 2020
3
November, 2021
1
January, 2021
1
October, 2019
Software used
2
macs
1
deltasvm
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR366MMX
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Acinar
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR178LRM
released
Annotation file set
: Variant allelic effects annotation of Acinar cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR294OTS
released
Annotation file set
: pancreatic acinar cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP