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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
5
bigWig
4
bed bed3+
1
bigBed narrowPeak
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
tissue
Biosample term
14
fibroblast
12
endothelial cell
12
excitatory neuron
9
macrophage
9
pericyte cell
7
astrocyte
7
smooth muscle cell
6
endothelial cell of hepatic sinusoid
6
hepatocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic acinar cell
5
pancreatic ductal cell
5
skeletal muscle fiber
4
T cell
4
skeletal muscle satellite cell
3
B cell
3
adipocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
pancreatic alpha cell
3
pancreatic beta cell
3
type II pneumocyte
2
Muller cell
2
adipose-derived stem cell
2
blood vessel smooth muscle cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mesangial cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
pancreatic delta cell
2
pancreatic stellate cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
type I muscle cell
2
type I pneumocyte
2
type II muscle cell
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
Schwann cell
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatic stellate cell
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
leukocyte
1
lung neuroendocrine cell
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
memory B cell
1
mesenchymal stem cell
1
metanephros
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
neural cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
pigmented layer of retina
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
preadipocyte
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thyroid follicular cell
1
tissue-resident macrophage
1
trophoblast giant cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
5
epithelium
5
pancreas
Life stage
1
adult
Date released
3
June, 2020
3
November, 2021
2
February, 2024
1
January, 2021
1
October, 2019
Software used
5
macs
Lab
3
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Project
3
ENCODE
2
AMP
RFA
3
ENCODE3
2
AMP
Showing 5 of 5 results
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Download
FileSet
DSR366MMX
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Acinar
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR929UEX
released
Annotation file set
: Accessible chromatin annotation of Fetal Pancreatic Acinar Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR695XNH
released
Annotation file set
: Accessible chromatin annotation of Fetal Pancreatic Acinar Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR157ZRL
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Acinar Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR294OTS
released
Annotation file set
: pancreatic acinar cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP