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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
40
candidate regulatory elements
25
target gene predictions
19
accessible chromatin
19
chromatin state
6
variant allelic effects
3
eQTL
3
histone modifications
2
binding sites
1
gene expression
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Biosample term
87
monocyte
30
CD8-positive, alpha-beta T cell
20
breast cancer cell
20
neural progenitor cell
12
neuroblastoma cell
11
gastric cancer cell
10
diffuse intrinsic pontine glioma
9
Rhabdomyosarcoma
9
liposarcoma
8
HepG2
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
neuroblastoma cell line
7
B-lymphoblastoid cell line
7
fibroblast cell line
7
hESC cell
7
keratinocyte
7
mammary epithelial cell
7
melanoma
7
osteosarcoma
7
squamous cell lung carcinoma
6
Chondroid Chordoma
6
acute myeloid leukemia
6
endothelial cell of hepatic sinusoid
6
foreskin fibroblast
6
glioblastoma multiforme cancer stem cell
6
neuronal stem cell
6
prostate cancer cell line
5
Ewing sarcoma
5
MCF-7
5
cardiac muscle cell
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
esophageal squamous cell carcinoma
5
glioblastoma cell
5
hepatocyte
5
lymphoblastoid cell line
5
melanoma cell
5
osteoblast
5
synovial sarcoma cell
5
triple-negative breast cancer
4
HS-SY-2 cell
4
Jurkat
4
Mantle cell lymphoma
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
brain
4
bronchial epithelial cell
4
colon adenocarcinoma
4
dermal fibroblast
4
erythroid progenitor cell
4
fibroblast
4
glioma cell
4
immortal neural cell line cell
4
leukemic stem cell
4
metastatic melanoma
4
pancreatic cell line
4
pancreatic ductal cell
4
prostate gland
4
rhabdomyosarcoma cell
4
tracheal epithelial cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
DND-41 cell
3
GM06990
3
GM10847
3
GM12864
3
GM12865
3
GM12872
3
GM12873
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HEK293-T-REx cell
3
HL-60
3
IMR-90
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SK-N-MC
3
SK-N-SH_RA
3
T-47D cell
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
aortic adventitial fibroblast
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
endothelial cell
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hematopoietic cell
3
hepatic stellate cell
3
islet of Langerhans
3
kidney
3
liver
3
lung fibroblast cell line
3
lymphoblast
3
mammary gland epithelial cell
3
mononuclear cell of bone marrow
3
multiple myeloma cell line
3
myotube
3
pancreatic ductal adenocarcinoma
3
placenta
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
prostate derived cell line
3
renal epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
3
spinal cord
3
umbilical cord mesenchymal stem cell line cell
2
143B
2
22Rv1
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AGS cell
2
ALL-SIL cell
2
Adipose stromal cell
2
AsPC-1 cell
B cell
2
B-cell lymphoma cell
2
BCBL-1 cell
2
BEAS-2B cell
2
BG03
2
BICR 31
2
BT-474 cell
2
BT-549 cell
2
Burkitt's lymphoma
2
BxPC-3 cell
2
C666-1 cell
2
CA46 cell
2
CAL-51 cell
2
CCRF-CEM cell
2
CD1c-positive myeloid dendritic cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD8-Positive T-Lymphocytes
2
CFPAC-1 cell
2
CHL-1 cell
2
CHP-134 cell
2
CMK
2
COLO 741 cell
2
CTV-1 cell
2
CaSki cell
2
Caki-1 cell
2
Calu-1 cell
2
Calu-3 cell
2
D283 Med cell
2
D341 Med cell
2
DK cell
2
DLD-1 cell
2
DOHH-2 cell
2
DU 145 cell
2
Daudi
2
Detroit562
2
EAhy 926 cell
2
ECC-1
2
EOL-1 cell
Organ
4
connective tissue
1
stomach
Date released
4
February, 2021
1
October, 2022
Software used
4
macs
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
B cell
Showing 5 of 5 results
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Download
FileSet
DSR994UFP
released
Annotation file set
: Binding sites annotation for fibroblast (Fibrobl) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR437KPA
released
Annotation file set
: Histone modifications annotation for Others PDNC-4 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497XLY
released
Annotation file set
: Histone modifications annotation for Digestive tract Gastric_primary_sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143HRT
released
Annotation file set
: Histone modifications annotation for Breast Breast_organoids from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748RMF
released
Annotation file set
: Binding sites annotation for Breast Breast_organoids from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP