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Schema
Citing CMDGA
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Annotation type
1
caQTL
Annotation Category
1
Genetic variant effects
Annotation type Category
RNA-seq
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
hg19
26
GRCh38
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
15
epithelial cell of proximal tubule
14
glomerular endothelial cell
9
extended pluripotent stem (EPS) cells
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
7
endothelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
kidney interstitial cell
6
pancreatic acinar cell
6
pancreatic beta cell
6
pancreatic delta cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic alpha cell
5
pancreatic stellate cell
4
glomerular visceral epithelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mesangial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
adult endothelial progenitor cell
3
hepatocyte
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
macrophage
3
nephron progenitor
3
pancreatic quiescent stellate cell
2
CD4-positive helper T cell
2
Kupffer cell
2
S-shaped body
2
adipose-derived stem cell
2
cardiomyocytes (cardiac muscle cell)
2
differentiating adipose-derived stem cell
2
gamma-delta T cell
2
hepatic stellate cell
2
kidney inner medulla collecting duct intercalated cell
2
kidney loop of Henle descending limb epithelial cell
2
natural killer cell
2
pancreatic polypeptide-secreting cell
2
renal vesicle
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
HepG2
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T-helper 17 cell
1
activated pancreatic stellate cell
1
adipose tissue
1
alpha-beta T cell
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
bone tissue
1
caudate nucleus
1
cholangiocyte
1
coronary artery
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of umbilical vein
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
fibroblast of the aortic adventitia
1
globus pallidus
1
heart
1
heart right ventricle
1
inflammatory macrophage
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
left cardiac atrium
1
left renal cortex interstitium
1
leukocyte
1
mast cell
1
mature B cell
1
medulla oblongata
1
mesenchymal cell
1
meso-epithelial cell
1
midbrain
1
middle frontal gyrus
1
mitral valve
1
myocyte
1
neural progenitor cell
1
neuron cell of Hypothalamus (neuron)
1
pancreatic cell
1
pancreatic epsilon cell
1
plasma cell
1
pons
1
proximal tubule
1
pulmonary valve
1
putamen
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
right cardiac atrium
1
right kidney
1
right renal cortex interstitium
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
superior temporal gyrus
1
tricuspid valve
1
ureteric bud
Organ
1
artery
1
blood vessel
1
heart
1
vasculature
Date released
1
February, 2023
Software used
1
rasqual
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
assembly!
hg19
annotation_type_category!
RNA-seq
Showing 1 of 1 results
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Download
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP