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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
eQTL
Annotation Category
3
cis-regulatory elements
2
Target gene links
1
Genetic variant effects
Annotation type Category
ChIP-seq
48
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
1
RNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
52
HeLa-S3
47
H1-hESC
29
endothelial cell
27
macrophage
26
fibroblast
26
monocyte
22
islet of Langerhans
21
EndoC_BH1
20
smooth muscle cell
19
HFFc6
19
kidney
19
pancreatic ductal cell
19
pericyte cell
18
K562
18
neural progenitor cell
17
induced pluripotent stem cell
15
CD14-positive monocyte
15
pancreatic acinar cell
14
excitatory neuron
13
pancreatic beta cell
12
B cell
12
CD8-positive, alpha-beta T cell
12
adipocyte
12
astrocyte
12
pancreatic alpha cell
12
pancreatic delta cell
11
cardiomyocytes
11
liver
10
T cell
10
pituitary stalk
10
regulatory T cell
9
extended pluripotent stem (EPS) cells
9
heart
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
pancreatic stellate cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
GM12878
8
embryonic stem cell
8
mesenchymal stem cell
7
H9
7
T-helper 1 cell
7
adipose tissue
7
coronary artery
7
erythroblast
7
hepatocyte
7
lymphoblastoid cell line
7
natural killer cell
7
skeletal muscle satellite cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 17 cell
6
T-helper 2 cell
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cardiomyocytes (cardiac muscle cell)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
naive B cell
6
olfactory receptor cell
6
osteoblast
6
stomach
5
HUES8
5
T follicular helper cell
5
adrenal gland
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreas
5
right atrium auricular region
5
spleen
5
tibial artery
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
frontal cortex
4
gabaergic neuron
4
gamma-delta T cell
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
heart left ventricle
4
heart right ventricle
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesangial cell
4
mesothelial cell
4
myofibroblast cell
4
nephron progenitor
4
ovary
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
skeletal muscle myoblast
4
skin fibroblast
4
small intestine
4
smooth muscle cell of the esophagus
4
spinal cord
4
thymus
4
tibial nerve
4
type B pancreatic cell
4
type I pneumocyte
3
cardiac fibroblast
3
HepG2
3
Jurkat
3
S-shaped body
3
Schwann cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
glial cell
3
goblet cell
3
hepatocyte(AFP)
3
kidney epithelial cell
3
kidney interstitial cell
3
left cardiac atrium
3
mast cell
3
mesendoderm
3
microglial cell
3
muscle of leg
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
occipital lobe
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
placenta
3
plasma cell
3
plasmacytoid dendritic cell
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
retina
3
schwann cell
3
sigmoid colon
3
skin of body
3
smooth muscle cell of the coronary artery
3
subcutaneous adipose tissue
3
thyroid follicular cell
3
thyroid gland
3
transverse colon
3
trophoblast cell
3
uterus
2
hindlimb muscle
2
muscle of leg
2
A549
2
Ammon's horn
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
Organ
6
stomach
Life stage
adult
Date released
3
June, 2020
2
May, 2021
1
January, 2022
Software used
3
macs
2
abc
1
qTLtools
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
relevant_life_stage!
adult
annotation_type_category!
ChIP-seq
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR542EVP
released
Annotation file set
: stomach eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR355FEE
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769DZK
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Gastric primary sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR936OND
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Fetal stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP