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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
53
heart
52
kidney
46
stomach
45
islet of Langerhans
44
CD8-positive, alpha-beta T cell
44
brain
42
neural progenitor cell
41
endothelial cell
36
liver
35
lung
34
adrenal gland
34
hepatocyte
34
muscle of arm
34
placenta
34
retina
34
small intestine
31
fibroblast
31
muscle of leg
30
B cell
29
large intestine
28
thymus
27
common myeloid progenitor, CD34-positive
27
macrophage
26
left lung
25
adipose tissue
25
muscle of back
24
hematopoietic multipotent progenitor cell
24
pancreatic ductal cell
23
CD14-positive monocyte
23
adipocyte
23
heart left ventricle
23
regulatory T cell
23
right lung
23
smooth muscle cell
22
right kidney
21
epithelial cell of proximal tubule
21
pericyte cell
21
renal pelvis
20
pigmented layer of retina
20
renal cortex interstitium
19
T cell
19
glomerular endothelial cell
19
spleen
19
subcutaneous adipose tissue
19
tibial nerve
18
CD4-positive, alpha-beta memory T cell
18
coronary artery
18
left kidney
18
pancreatic beta cell
17
T-helper 1 cell
17
caudate nucleus
17
natural killer cell
17
pancreatic alpha cell
16
T-helper 17 cell
16
body of pancreas
16
endothelial cell of hepatic sinusoid
16
pancreas
16
spinal cord
15
astrocyte
15
embryonic stem cell
15
mesenchymal stem cell
15
osteoblast
15
pancreatic acinar cell
15
pancreatic delta cell
15
right atrium auricular region
15
tibial artery
14
CD8-positive, alpha-beta memory T cell
14
endothelial cell of umbilical vein
14
excitatory neuron
14
frontal cortex
14
keratinocyte
14
retinal pigment epithelial cell
14
trophoblast cell
13
cerebellum
13
heart right ventricle
13
mammary gland epithelial cell
13
substantia nigra
12
T-helper 2 cell
12
ascending aorta
12
mononuclear cell
12
sigmoid colon
12
skeletal muscle myoblast
11
cardiomyocytes
11
erythroblast
11
foreskin keratinocyte
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
putamen
11
skeletal muscle satellite cell
11
thyroid gland
10
Ammon's horn
10
fibroblast of lung
10
foreskin fibroblast
10
gastrocnemius medialis
10
left cardiac atrium
10
mammary epithelial cell
10
pancreatic stellate cell
10
skeletal muscle tissue
10
testis
9
aorta
9
extended pluripotent stem (EPS) cells
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
induced pluripotent stem cell
9
layer of hippocampus
9
transverse colon
8
T-cell acute lymphoblastic leukemia
8
bronchial epithelial cell
8
cardiac muscle cell
8
cardiomyocytes (cardiac muscle cell)
8
chorionic villus
8
endocrine pancreas
8
fibroblast of dermis
8
glutamatergic neuron
8
hepatic stellate cell
8
memory B cell
8
progenitor cell of endocrine pancreas
8
prostate gland
8
skeletal muscle fiber
8
temporal lobe
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
Peyer's patch
7
amygdala
7
chorion membrane
7
dendritic cell
7
hypothalamus
7
mature neutrophil
7
mesendoderm
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
skin fibroblast
7
upper lobe of left lung
6
alternatively activated macrophage
6
angular gyrus
6
anterior cingulate cortex
6
breast epithelium
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
colonic mucosa
6
cortical cell of adrenal gland
6
enterocyte
6
esophagus
6
esophagus muscularis mucosa
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
gamma-delta T cell
6
globus pallidus
6
kidney interstitial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
left renal pelvis
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
thoracic aorta
6
trophoblast
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_type!
cell line
annotation_type!
candidate regulatory elements
Showing 7 of 7 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP