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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
5
accessible chromatin
5
target gene predictions
3
gene expression
1
chromatin state
Annotation Category
5
Target gene links
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
1
bed bed9+
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
41
heart
40
stomach
34
brain
33
lung
32
muscle of arm
32
small intestine
31
adrenal gland
30
kidney
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
liver
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
15
heart left ventricle
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
adipocyte
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
pericyte cell
10
heart right ventricle
10
ovary
9
body of pancreas
9
endothelial cell of umbilical vein
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
aorta
8
chorionic villus
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
keratinocyte
8
natural killer cell
8
pancreas
8
smooth muscle cell
7
caudate nucleus
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
chorion membrane
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
hepatocyte
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
mucosa of rectum
5
neutrophil
5
right cardiac atrium
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
5
trophoblast
4
Brodmann (1909) area 46
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
tongue
4
urinary bladder
4
vagina
3
Ammon's horn
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
foreskin fibroblast
3
germinal matrix
3
macrophage
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
type B pancreatic cell
3
uterus
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
amnion
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
arm bone
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
cardiac mesoderm primordium
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cortical cell of adrenal gland
2
ectodermal cell
2
embryonic facial prominence
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
femur
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
foreskin melanocyte
2
gabaergic neuron
2
gastroesophageal sphincter
2
germinal center
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
Life stage
1
child
Date released
2
May, 2021
1
January, 2021
1
May, 2020
1
May, 2022
1
November, 2021
Software used
3
abc
1
chicago
1
chromhmm
1
cicero
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
ENCODE3
1
T1D
biosample_type!
cell line
annotation_type!
variant to gene
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP