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Annotation type
1
representative DNase hypersensitivity sites
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
Available data
1
tsv
File set status
1
released
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
1
myocyte
Date released
1
February, 2021
Software used
2001
r
1224
macs
773
chromhmm
686
encode-ccres
202
abc
134
deltasvm
116
deseq2
106
qTLtools
32
cicero
26
chicago
25
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
15
limix
14
matrix-eQTL
13
hiccups
12
deeptools
12
samtools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_type!
cell line
biosample_term_name!
Peyer's patch
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Download
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP