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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
40
stomach
37
heart
33
lung
33
muscle of arm
29
brain
29
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
20
common myeloid progenitor, CD34-positive
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
left kidney
17
hematopoietic multipotent progenitor cell
15
spleen
14
spinal cord
13
liver
11
B cell
11
foreskin keratinocyte
11
heart left ventricle
10
sigmoid colon
9
trophoblast cell
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
transverse colon
7
Peyer's patch
7
adipose tissue
7
neurosphere
7
psoas muscle
7
testis
7
upper lobe of left lung
6
CD14-positive monocyte
6
CD8-positive, alpha-beta T cell
6
dermis blood vessel endothelial cell
6
endocrine pancreas
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
foreskin fibroblast
6
heart right ventricle
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
natural killer cell
6
retina
6
right renal pelvis
6
tibial nerve
5
CD4-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
breast epithelium
5
caudate nucleus
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
mononuclear cell
5
neural progenitor cell
5
omental fat pad
5
pancreas
5
parathyroid adenoma
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
4
T-helper 1 cell
4
angular gyrus
4
aorta
4
ascending aorta
4
cardiac muscle cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
eye
4
fibroblast of breast
4
foreskin melanocyte
4
mesenchymal stem cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle tissue
4
stomach smooth muscle
4
thoracic aorta
4
tongue
4
trophoblast
4
vagina
3
CD4-positive, alpha-beta memory T cell
3
T cell
3
T-helper 2 cell
3
cerebellum
3
coronary artery
3
fibroblast of lung
3
kidney tubule cell
3
limb
3
neural cell
3
regulatory T cell
3
right atrium auricular region
3
suprapubic skin
3
tibial artery
3
urinary bladder
3
uterus
2
Ammon's horn
2
Brodmann (1909) area 46
2
T-cell
2
adipocyte
2
amnion
2
bipolar neuron
2
cardiac fibroblast
2
cardiac myoblast
2
cardiovascular progenitor cell
2
cerebellar cortex
2
chorion
2
chorion membrane
2
ectodermal cell
2
femur
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
frontal cortex
2
germinal matrix
2
globus pallidus
2
glomerular visceral epithelial cell
2
hepatocyte
2
islet precursor cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
mammary epithelial cell
2
mammary gland epithelial cell
2
mesendoderm
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of stomach
2
muscle cell
2
naive T cell
2
neuroepithelial stem cell
2
neuron
neuronal stem cell
2
placental basal plate
2
putamen
2
right cardiac atrium
2
right lobe of liver
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell
2
subcutaneous adipose tissue
2
umbilical cord
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
arm bone
1
cardiac mesoderm primordium
1
ecto neural progenitor cell
1
embryonic facial prominence
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
forelimb muscle
1
hepatic stellate cell
1
hindlimb muscle
1
inferior parietal cortex
1
kidney capillary endothelial cell
1
left leg bone
1
leg bone
1
luminal epithelial cell of mammary gland
1
mammary stem cell
1
medulla oblongata
1
mid-neurogenesis radial glial cells
1
midbrain
1
myocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
occipital lobe
1
olfactory neurosphere cell line
1
pons
1
radial glial cell
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
right arm bone
1
skin of body
1
superior temporal gyrus
Organ
2
connective tissue
Life stage
2
adult
unknown
Date released
1
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_type!
cell line
biosample_term_name!
neuronal stem cell
relevant_life_stage!
unknown
Showing 2 of 2 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP