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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
104
monocyte
35
CD8-positive, alpha-beta T cell
26
neural progenitor cell
24
retina
20
pigmented layer of retina
17
endothelial cell
17
fibroblast
13
excitatory neuron
12
hepatocyte
12
kidney
12
macrophage
10
B cell
10
pancreatic ductal cell
10
pericyte cell
10
retinal pigment epithelial cell
9
astrocyte
9
smooth muscle cell
8
islet of Langerhans
8
pancreatic beta cell
7
T cell
7
adipocyte
7
embryonic stem cell
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
heart
6
liver
6
natural killer cell
6
neuroblastoma cell line
6
pancreas
6
regulatory T cell
5
SGBS preadipocytes
5
T-cell acute lymphoblastic leukemia
5
brain
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
acute myeloid leukemia cell
4
heart left ventricle
4
hepatic stellate cell
4
keratinocyte
4
mammary epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
neuronal stem cell
4
pancreatic stellate cell
4
rhabdomyosarcoma cell
4
stomach
4
type II pneumocyte
3
cardiac fibroblast
3
CD4-positive helper T cell
3
T-helper 1 cell
3
Th1 cell
3
adipose-derived stem cell
3
aortic endothelial cell
3
bone marrow cell
3
caudate nucleus
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
erythroid cell
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
mammary gland epithelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic ductal adenocarcinoma
3
placenta
3
plasma cell
3
preadipocyte
3
prostate gland
3
putamen
3
right atrium auricular region
3
skeletal muscle myoblast
3
skin fibroblast
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
B-lymphocyte
2
CD1c-positive myeloid dendritic cell
2
Ishikawa
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Th17 cell
2
adipose tissue
2
aortic adventitial fibroblast
2
basal cell
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum
2
ciliated cell
2
club cell
2
colon adenocarcinoma
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endometriosis
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid progenitor cell
2
esophageal adenocarcinoma
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foreskin keratinocyte
2
foreskin melanocyte
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hematopoietic multipotent progenitor cell
2
iPS DF 4.7 Cell Line
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
large intestine
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mantle cell lymphoma cell
2
mast cell
2
mature natural killer cell
2
medulla oblongata
2
medulloblastoma cell line
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesendoderm
2
mesothelial cell
2
muscle of leg
2
naive regulatory T cell
2
neoplastic cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
peripheral blood stem cell
2
plasmacytoid dendritic cell
2
pons
2
pre-B acute lymphoblastic leukemia cell
2
prefrontal cortex
2
pulmonary artery endothelial cell
2
pulmonary interstitial fibroblast
2
renal cortical epithelial cell
2
renal epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spleen
2
subcutaneous adipose tissue
2
testis
2
thymus
2
trophoblast cell
2
umbilical cord
2
upper lobe of left lung
1
hindlimb muscle
1
Adipose stromal cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
BICR 31
1
Barrett's epithelial cell line
1
Brodmann (1909) area 9
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CD8-Positive T-Lymphocytes
1
Chondroid Chordoma
1
Crypt of Lieberkuhn
1
EAhy 926 cell
1
Glioblastoma
Organ
7
connective tissue
Date released
2
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
7
macs
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
biosample_type!
cell line
Showing 7 of 7 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP