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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
58
candidate regulatory elements
34
chromatin state
30
target gene predictions
12
accessible chromatin
8
gene expression
5
histone modifications
3
eQTL
2
binding sites
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
3
Genetic variant effects
Annotation type Category
5
ChIP-seq
3
RNA-seq
Available data
6
bed bed3+
File set status
8
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
90
monocyte
30
CD8-positive, alpha-beta T cell
16
neural progenitor cell
14
islet of Langerhans
9
liver
7
macrophage
6
neuroblastoma cell line
6
subcutaneous adipose tissue
5
T-cell acute lymphoblastic leukemia
5
brain
4
adipose tissue
4
hepatocyte
4
putamen
4
rhabdomyosarcoma cell
4
substantia nigra
3
amygdala
3
blood cell
3
cartilage tissue
3
caudate nucleus
3
cerebellum
3
fibroblast
3
hypothalamus
3
kidney
3
mammary epithelial cell
3
natural killer cell
3
neuronal stem cell
3
nucleus accumbens
3
pancreatic ductal adenocarcinoma
3
placenta
3
prostate gland
3
regulatory T cell
3
skeletal muscle tissue
3
skin of body
2
B cell
2
T cell
2
Th1 cell
2
acute myeloid leukemia cell
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
colon adenocarcinoma
2
coronary artery
2
cortex of kidney
2
endometriosis
2
endothelial cell
2
erythroid progenitor cell
2
esophageal adenocarcinoma
2
foreskin fibroblast
2
frontal cortex
2
heart left ventricle
2
keratinocyte
2
layer of hippocampus
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
2
omental fat pad
2
osteoblast
2
pancreas
2
pancreatic ductal cell
2
pituitary gland
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
retina
2
right atrium auricular region
2
stomach
2
testis
2
tibial artery
2
tibial nerve
2
tracheal epithelial cell
1
Adipose stromal cell
1
Ammon's horn
1
B-cell lymphoma cell
1
B-lymphocyte
1
BICR 31
1
Barrett's epithelial cell line
1
Brodmann (1909) area 9
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive helper T cell
1
CD8-Positive T-Lymphocytes
1
Chondroid Chordoma
1
Crypt of Lieberkuhn
1
EAhy 926 cell
1
Ishikawa
1
Leydig cell
1
Rhabdoid Tumor of the Kidney
1
Stromal Predominant Kidney Wilms Tumor
1
T follicular helper cell
1
T-cell lymphoma cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
T-lymphoma cell line
1
Th17 cell
1
Uveal Melanoma
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adipocyte
1
adipose-derived stem cell
1
adrenal gland
1
alveolar cell type II
1
anterior parahippocampal gyrus
1
aortic adventitial fibroblast
1
aortic endothelial cell
1
arcuate nucleus of hypothalamus
1
ascending aorta
1
astrocyte
1
atypical teratoid rhabdoid tumor
1
bed nucleus of stria terminalis
1
body of pancreas
1
bone cell
1
bone marrow cell
1
breast
1
breast carcinoma
1
bronchial epithelial cell
1
cardiac muscle myoblast
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
chondroblastoma
1
chronic lymphocytic leukemia
1
chronic lymphocytic leukemia cell
1
chronic myelomonocytic leukemia
1
circle of Willis
1
claustrum of brain
1
colon carcinoma
1
colon sigmoid
1
colonic adenoma cell
1
colonic mucosa
1
colorectal adenocarcinoma
1
colorectal cancer
1
colorectal carcinoma
1
columnar chondrocyte
1
corneal epithelium
1
cortex
1
dentate nucleus
1
diffuse intrinsic pontine glioma
1
diffuse large B-cell lymphoma
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
dura mater
1
embryonic fibroblast
1
embryonic stem cell
1
endometrial stromal cell
1
endometrial stromal tumor
1
endometrioid carcinoma
1
endometrium cancer
1
entorhinal cortex
1
ependymoma
1
epidermal stem cell
1
erythroid cell
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
fibroblast of mammary gland
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
fibroblast-like synoviocyte
1
first pancreatic bud
1
foreskin keratinocyte
1
foreskin melanocyte
1
frontal pole
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
granulocyte
1
gyrus rectus
1
hESC cell
1
head and neck neoplasia
1
head and neck squamous cell carcinoma
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
heart
1
helper T cell
1
hematopoietic multipotent progenitor cell
1
hepatic stellate cell
1
hepatocellular carcinoma
1
iPS DF 4.7 Cell Line
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney epithelium
1
large intestine
1
left ventricle myocardium
1
leukemic stem cell
1
locus ceruleus
1
lung
1
lymphoid progenitor cell
1
mammary gland
1
mammary gland epithelial cell
1
mast cell
1
mature neutrophil
1
medial dorsal nucleus of thalamus
1
melanoma cell line
Organ
5
brain
3
kidney
Date released
5
February, 2021
2
January, 2022
1
August, 2021
Software used
5
macs
2
qTLtools
1
matrix-eQTL
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_type!
cell line
Showing 8 of 8 results
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR980HRA
released
Annotation file set
: Histone modifications annotation for Neural Whole_brains from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR392JNG
released
Annotation file set
: Histone modifications annotation for Neural Fetal_brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR027TQK
released
Annotation file set
: Histone modifications annotation for Neural Adult_brains from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR007RUJ
released
Annotation file set
: Histone modifications annotation for Kidney Nephrectomy_sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761JKG
released
Annotation file set
: Histone modifications annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP