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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
7
DNase-seq
6
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
61
stomach
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
39
left lung
34
thymus
33
right lung
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
23
liver
23
spleen
22
spinal cord
18
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
chorionic villus
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
11
natural killer cell
11
pericyte cell
10
Peyer's patch
10
adipocyte
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
neural progenitor cell
10
neurosphere
10
pancreas
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
smooth muscle cell
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
foreskin fibroblast
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
mesenchymal stem cell
8
right renal pelvis
7
endothelial cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast of cardiac tissue
7
hepatocyte
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
7
trophoblast
6
T-cell
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
cerebellum
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesendoderm
5
mesodermal cell
5
right atrium auricular region
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
Ammon's horn
4
Brodmann (1909) area 46
4
bipolar neuron
4
dermis lymphatic vessel endothelial cell
4
fibroblast
4
frontal cortex
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
muscle cell
4
neural cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
CD1c-positive myeloid dendritic cell
3
amnion
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cardiomyocytes (cardiac muscle cell)
3
cerebellar cortex
3
choroid plexus epithelial cell
3
colon epithelial cell
3
ectodermal cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
femur
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
germinal matrix
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
iris pigment epithelial cell
3
islet precursor cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
left cardiac atrium
3
macrophage
3
middle frontal gyrus
3
mucosa of stomach
3
neuron
3
neuronal stem cell
3
non-pigmented ciliary epithelial cell
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
pulmonary artery endothelial cell
3
putamen
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
right lobe of liver
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
Organ
8
connective tissue
Life stage
3
adult
3
embryonic
Date released
4
September, 2022
2
February, 2021
1
March, 2020
1
May, 2021
Software used
4
r
2
encode-ccres
1
abc
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_type!
cell line
biosample_term_name!
fibroblast of the aortic adventitia
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP