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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
1
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
88
monocyte
35
CD8-positive, alpha-beta T cell
22
stomach
21
heart
21
neural progenitor cell
19
CD14-positive monocyte
19
brain
17
adrenal gland
17
lung
17
placenta
17
small intestine
16
kidney
16
muscle of arm
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
12
B cell
12
liver
11
hematopoietic multipotent progenitor cell
11
right lung
10
pericyte cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
adipose tissue
8
endothelial cell
8
heart left ventricle
8
hepatocyte
8
psoas muscle
8
spinal cord
8
spleen
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
keratinocyte
7
natural killer cell
7
sigmoid colon
7
smooth muscle cell
6
dendritic cell
6
mononuclear cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
ovary
6
pancreas
5
T-cell acute lymphoblastic leukemia
5
astrocyte
5
body of pancreas
5
fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
pancreatic ductal cell
5
regulatory T cell
5
thyroid gland
5
transverse colon
4
T cell
4
aorta
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
layer of hippocampus
4
mammary epithelial cell
4
mesendoderm
4
neuronal stem cell
4
osteoblast
4
pancreatic delta cell
4
prostate gland
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
testis
4
upper lobe of left lung
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
breast epithelium
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colon epithelial cell
3
colonic mucosa
3
coronary artery
3
epithelial cell of prostate
3
esophagus
3
luminal epithelial cell of mammary gland
3
macrophage
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal adenocarcinoma
3
skin fibroblast
3
substantia nigra
3
temporal lobe
3
tibial nerve
3
trophoblast
3
type B pancreatic cell
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
T-cell
2
Th1 cell
2
activated CD4-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
cingulate gyrus
2
colon adenocarcinoma
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
embryonic stem cell
2
endodermal cell
2
endometriosis
2
enteric smooth muscle cell
2
erythroblast
2
erythroid progenitor cell
2
esophageal adenocarcinoma
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foreskin melanocyte
2
frontal cortex
2
gabaergic neuron
2
globus pallidus
2
glutamatergic neuron
2
hepatic stellate cell
2
islet of Langerhans
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mantle cell lymphoma cell
2
mast cell
2
medulloblastoma cell line
2
megakaryocyte
2
memory B cell
2
mesodermal cell
2
midbrain
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
myotube
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
plasma cell
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
pulmonary artery endothelial cell
2
putamen
2
retinal pigment epithelial cell
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
superior temporal gyrus
2
thoracic aorta
2
tibial artery
2
tongue
2
tracheal epithelial cell
Organ
5
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_type!
cell line
biosample_term_name!
Peyer's patch
Showing 5 of 5 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP