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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
51
CD8-positive, alpha-beta T cell
44
islet of Langerhans
41
endothelial cell
39
kidney
35
neural progenitor cell
33
heart
31
fibroblast
31
hepatocyte
31
retina
29
stomach
28
liver
28
macrophage
25
brain
24
pancreatic ductal cell
22
smooth muscle cell
21
adipocyte
21
subcutaneous adipose tissue
20
B cell
20
adrenal gland
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
heart left ventricle
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
glomerular endothelial cell
18
large intestine
18
placenta
18
regulatory T cell
18
small intestine
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
coronary artery
15
embryonic stem cell
15
muscle of back
15
pancreas
15
pancreatic acinar cell
15
pancreatic alpha cell
15
tibial nerve
14
T-helper 1 cell
14
adipose tissue
14
astrocyte
14
endothelial cell of umbilical vein
14
excitatory neuron
14
thymus
13
caudate nucleus
13
foreskin fibroblast
13
hematopoietic multipotent progenitor cell
13
left lung
13
mammary epithelial cell
13
mesenchymal stem cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
natural killer cell
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
12
T-helper 17 cell
12
body of pancreas
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T cell
11
cardiac muscle cell
11
cardiomyocytes
11
erythroblast
11
keratinocyte
11
omental fat pad
11
putamen
11
tibial artery
10
ascending aorta
10
cerebellum
10
foreskin keratinocyte
10
frontal cortex
10
heart right ventricle
10
neuronal stem cell
10
pancreatic stellate cell
10
right kidney
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
Ammon's horn
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left cardiac atrium
9
left kidney
9
neutrophil
9
ovary
9
testis
8
T-cell acute lymphoblastic leukemia
8
T-helper 2 cell
8
cardiomyocytes (cardiac muscle cell)
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
mature neutrophil
8
memory B cell
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
amygdala
7
aorta
7
dendritic cell
7
fibroblast of lung
7
hypothalamus
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
layer of hippocampus
7
mammary gland epithelial cell
7
mesangial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
neuroblastoma cell line
7
nucleus accumbens
7
spinal cord
7
temporal lobe
6
T-cell
6
alternatively activated macrophage
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
foreskin melanocyte
6
gamma-delta T cell
6
gastrocnemius medialis
6
hepatic stellate cell
6
left renal cortex interstitium
6
left renal pelvis
6
plasma cell
6
sigmoid colon
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Peyer's patch
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_type!
cell line
month_released!
September, 2022
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP