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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
15
gene expression
4
eQTL
3
accessible chromatin
2
hQTL
2
target gene predictions
1
binding sites
1
meQTL
1
sQTL
Annotation Category
3
cis-regulatory elements
Annotation type Category
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
16
fibroblast
15
endothelial cell
12
excitatory neuron
12
macrophage
10
pericyte cell
9
smooth muscle cell
7
T cell
7
astrocyte
7
pancreatic ductal cell
6
B cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
heart
4
pancreas
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
adipocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
hepatic stellate cell
3
hepatocyte
3
kidney
3
mesenchymal stem cell
3
monocyte
3
natural killer cell
3
osteoblast
3
regulatory T cell
3
retinal pigment epithelial cell
3
skin fibroblast
3
stomach
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
Muller cell
2
acute myeloid leukemia cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
capillary endothelial cell
2
caudate nucleus
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
gabaergic neuron
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
glutamatergic neuron
2
heart left ventricle
2
islet of Langerhans
2
keratinocyte
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
medulla oblongata
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
occipital lobe
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
retina
2
right atrium auricular region
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
superior temporal gyrus
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Schwann cell
1
T-helper 1 cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
alveolar macrophage
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
bipolar neuron
1
brain microvascular endothelial cell
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
chorion membrane
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
coronary artery
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
eccrine cell
1
embryonic facial prominence
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
extravillous trophoblast
1
eye
1
fetal heart
1
fetal thymocyte
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
forelimb muscle
1
foreskin fibroblast
1
foreskin keratinocyte
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
gastrocnemius medialis
1
glomerular epithelium
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hematopoietic multipotent progenitor cell
1
hepatoblast
1
iPS DF 4.7 Cell Line
1
inferior parietal cortex
1
intestinal tuft cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
large intestine
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
limb
1
liver
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
mesendoderm
1
metanephros
Date released
2
June, 2020
1
January, 2021
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
biosample_type!
cell line
annotation_type_category!
ATAC-seq
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D