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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
15
gene expression
5
accessible chromatin
2
hQTL
2
histone modifications
2
target gene predictions
1
binding sites
1
eQTL
1
meQTL
1
sQTL
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
18
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
5
primary cell
Biosample term
22
retina
20
pigmented layer of retina
7
retinal pigment epithelial cell
6
embryonic stem cell
5
B cell
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
monocyte
5
regulatory T cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell
4
glutamatergic neuron
4
natural killer cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
T-helper 1 cell
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic ductal cell
3
stomach
2
T cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
erythroid cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
heart
2
islet of Langerhans
2
leukocyte
2
liver
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive regulatory T cell
2
osteoblast
2
pancreas
2
pancreatic acinar cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell
2
type I muscle cell
2
type II muscle cell
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
aortic adventitial fibroblast
1
basal cell
1
bipolar neuron
1
brain
1
breast epithelium
1
bronchial epithelial cell
1
caudate nucleus
1
chorion membrane
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
embryonic facial prominence
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
erythrocyte
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
eye
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin keratinocyte
1
foreskin melanocyte
1
frontal cortex
1
gabaergic neuron
1
gastrocnemius medialis
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular epithelium
1
hematopoietic multipotent progenitor cell
1
hepatic stellate cell
1
hepatocyte
1
iPS DF 4.7 Cell Line
1
immature natural killer cell
1
inferior parietal cortex
1
iris pigment epithelial cell
1
kidney
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
large intestine
1
limb
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mammary gland epithelial cell
1
medulla oblongata
1
megakaryocyte
1
mesendoderm
1
microglial cell/astrocyte
1
midbrain
1
muscle of leg
1
myeloid dendritic cell
1
myofibroblast cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
non-classical monocyte
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
occipital lobe
1
olfactory neurosphere cell line
1
oligodendrocyte
1
ovary
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
peripheral blood stem cell
1
placenta
1
plasma cell
1
pons
1
preadipocyte
1
prefrontal cortex
1
primordial germ cell
1
prostate gland
1
proximal tubule cells with injury markers
1
psoas muscle
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
putamen
1
renal cell carcinoma
1
renal cortex tubule
1
renal cortical epithelial cell
1
renal epithelial cell
1
renal intercalated cell
1
renal pelvis
1
renal principal cell
1
right atrium auricular region
1
right lung
1
sigmoid colon
1
small intestine
1
somatic gonadal cell
1
spinal cord
1
spleen
1
stellate neuron
1
superior temporal gyrus
1
testis
1
thymus
1
thyroid gland
1
tibial artery
1
tibial nerve
Date released
2
June, 2020
2
May, 2020
1
January, 2021
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
biosample_type!
cell line
assembly!
GRCh38
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP