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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
14
candidate regulatory elements
9
target gene predictions
8
chromatin state
2
accessible chromatin
2
gene expression
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Biosample type
in vitro differentiated cells
2
primary cell
Biosample term
23
retina
20
pigmented layer of retina
17
monocyte
6
islet of Langerhans
5
heart
5
osteoblast
5
pancreas
4
glutamatergic neuron
4
regulatory T cell
3
cardiac fibroblast
3
T-helper 1 cell
3
coronary artery
3
heart left ventricle
3
kidney
3
liver
3
pancreatic beta cell
3
right atrium auricular region
3
stomach
3
tibial artery
3
tibial nerve
2
Ammon's horn
2
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
aortic endothelial cell
2
bone marrow cell
2
brain
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
frontal cortex
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
hepatocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
muscle of leg
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
occipital lobe
2
omental fat pad
2
pancreatic alpha cell
2
pancreatic ductal cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
retinal pigment epithelial cell
2
skeletal muscle myoblast
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adrenal gland
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac muscle cell
1
cerebellar cortex
1
cerebellum
1
chorion membrane
1
choroid plexus epithelial cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell
1
epithelial cell of proximal tubule
1
erythroid cell
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
eye
1
fetal heart
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
forelimb muscle
1
foreskin fibroblast
1
gabaergic neuron
1
gastrocnemius medialis
1
glomerular epithelium
1
glomerular visceral epithelial cell
1
heart right ventricle
1
immature natural killer cell
1
inferior parietal cortex
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
large intestine
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
limb
1
mammary epithelial cell
1
mesenchymal stem cell
1
microglial cell/astrocyte
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
natural killer cell
1
neoplastic cell
1
neuron
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
ovary
1
pancreatic acinar cell
1
pancreatic delta cell
1
peripheral blood stem cell
1
placenta
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
prefrontal cortex
1
primordial germ cell
1
prostate gland
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
renal cortex interstitium
1
renal cortex tubule
1
renal epithelial cell
1
right kidney
1
right lung
1
right renal cortex interstitium
1
right renal pelvis
1
sigmoid colon
1
skeletal muscle cell
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
spinal cord
1
testis
1
thoracic aorta
1
thymus
1
thyroid gland
1
tongue
1
tracheal epithelial cell
1
transverse colon
1
trophoblast
1
trophoblast cell
1
type I muscle cell
1
type II muscle cell
1
umbilical cord
1
upper lobe of left lung
1
urinary bladder
1
uterus
Date released
2
May, 2020
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
1
Xin Sun, UCSD
Project
2
AMP
RFA
2
AMP
biosample_type!
cell line
in vitro differentiated cells
Showing 2 of 2 results
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Download
FileSet
DSR086SNH
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR709UFN
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP