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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
19
heart
16
CD14-positive monocyte
16
brain
16
lung
16
muscle of arm
16
stomach
15
placenta
15
small intestine
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
kidney
11
adrenal gland
11
right lung
10
pericyte cell
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
spinal cord
7
endothelial cell
7
smooth muscle cell
7
trophoblast cell
6
CD4-positive, alpha-beta memory T cell
6
dendritic cell
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
adipocyte
5
keratinocyte
5
muscle of trunk
5
neural progenitor cell
4
B cell
4
astrocyte
4
chorionic villus
4
common myeloid progenitor, CD34-positive
4
endothelial cell of umbilical vein
4
fibroblast
4
foreskin keratinocyte
4
heart left ventricle
4
hepatocyte
4
liver
4
psoas muscle
4
spleen
3
CD4-positive, alpha-beta T cell
3
T-helper 17 cell
3
chorion membrane
3
colon epithelial cell
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
heart right ventricle
3
macrophage
3
mesenchymal stem cell
3
mesendoderm
3
neurosphere
3
neutrophil
3
ovary
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
retina
3
sigmoid colon
3
skin fibroblast
3
trophoblast
3
type B pancreatic cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cortical cell of adrenal gland
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
eye
2
foreskin fibroblast
2
gabaergic neuron
2
glutamatergic neuron
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
osteoblast
2
pancreas
2
pancreatic alpha cell
2
pancreatic beta cell
2
regulatory T cell
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
tongue
2
type II pneumocyte
1
Ammon's horn
1
B cell, CD19-positive
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
T cell
1
T-helper 1 cell
1
T-helper 2 cell
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aorta
1
arm bone
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
basal cell
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
body of pancreas
1
brain microvascular endothelial cell
1
breast epithelium
1
cardiac endothelial cell
1
cardiac mesoderm primordium
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
coronary artery
1
dermis blood vessel endothelial cell
1
dorsolateral prefrontal cortex
1
eccrine cell
1
ectodermal cell
1
embryonic facial prominence
1
embryonic stem cell
1
endocardial cell
1
endocrine pancreas
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
esophagus
1
fat cell
1
femur
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric (mucosa of stomach)
1
gastrocnemius medialis
1
germinal center
1
germinal matrix
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
hematopoietic multipotent progenitor cell
1
inflammatory macrophage
1
intestinal tuft cell
1
iris pigment epithelial cell
1
islet precursor cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
left cardiac atrium
1
leg bone
1
lung microvascular endothelial cell
1
luteal cell
1
mammary epithelial cell
1
mast cell
Organ
3
connective tissue
Life stage
adult
1
embryonic
Date released
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_type!
cell line
files.file_type!
bigBed narrowPeak
relevant_life_stage!
adult
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP