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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
3
candidate regulatory elements
3
target gene predictions
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
8
cis-regulatory elements
Annotation type Category
5
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
8
bed bed3+
7
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
7
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
23
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
13
excitatory neuron
12
macrophage
10
kidney
10
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
B cell
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
adipocyte
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
islet of Langerhans
5
CD8-positive, alpha-beta T cell
5
SGBS preadipocytes
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
monocyte
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
liver
4
memory B cell
4
natural killer cell
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
CD4-positive helper T cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
alveolar macrophage
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
bipolar neuron
1
brain microvascular endothelial cell
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cardiac precursors
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
chorion membrane
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
embryonic facial prominence
1
embryonic stem cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
extravillous trophoblast
1
eye
1
fetal heart
1
fetal thymocyte
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
Organ
8
epithelium
8
liver
Life stage
5
adult
Date released
5
February, 2024
1
January, 2020
1
June, 2020
1
November, 2021
Software used
8
macs
Lab
5
Ines Cebola, Imperial College London
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
7
AMP
1
ENCODE
RFA
5
AMP2
2
AMP
1
ENCODE3
biosample_type!
cell line
month_released!
May, 2021
Showing 8 of 8 results
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Download
FileSet
DSR084ACR
released
Annotation file set
: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR614AYG
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin, 320µM palmitic acid and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR961YSK
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR909IMA
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM palmitic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR862SUJ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR683ANQ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 0.1nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR956IPN
released
Annotation file set
: Accessible chromatin annotation for Liver Hepatocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR934SGC
released
Annotation file set
: Accessible chromatin annotation of liver hepatocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP