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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
22
heart
21
brain
20
neural progenitor cell
20
stomach
18
kidney
16
lung
16
muscle of arm
16
placenta
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
thymus
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
B cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
mature neutrophil
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
spinal cord
6
adipose tissue
6
embryonic stem cell
6
hepatocyte
6
left cardiac atrium
6
mononuclear cell
6
neuroblastoma cell line
6
spleen
6
temporal lobe
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T-cell acute lymphoblastic leukemia
5
caudate nucleus
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
heart right ventricle
5
keratinocyte
5
layer of hippocampus
5
natural killer cell
5
sigmoid colon
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
colonic mucosa
4
endocrine pancreas
4
fibroblast of lung
4
gastrocnemius medialis
4
islet of Langerhans
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
CD4-positive, alpha-beta T cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
bronchial epithelial cell
3
cerebellum
3
chorion membrane
3
cingulate gyrus
3
coronary artery
3
duodenal mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
foreskin fibroblast
3
inflammatory macrophage
3
mucosa of rectum
3
naive T cell
3
neuronal stem cell
3
neurosphere
3
osteoblast
3
pancreatic ductal adenocarcinoma
3
right cardiac atrium
3
stomach smooth muscle
3
thoracic aorta
3
tibial artery
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
Th1 cell
2
acute myeloid leukemia cell
2
astrocyte
2
breast epithelium
2
colon adenocarcinoma
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
endometriosis
2
epithelial cell of prostate
2
erythroblast
2
erythroid progenitor cell
2
esophageal adenocarcinoma
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foreskin melanocyte
2
frontal cortex
2
germinal matrix
2
globus pallidus
2
hepatic stellate cell
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesendoderm
2
mesodermal cell
2
midbrain
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
occipital lobe
2
omental fat pad
2
pancreatic ductal cell
2
parathyroid adenoma
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
pulmonary artery endothelial cell
2
putamen
2
rectum smooth muscle tissue
2
retinal pigment epithelial cell
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
superior temporal gyrus
2
tongue
2
tracheal epithelial cell
2
trophoblast
2
umbilical cord
2
urinary bladder
2
vagina
1
Adipose stromal cell
1
Ammon's horn
1
B-cell lymphoma cell
1
B-lymphocyte
1
BICR 31
1
Barrett's epithelial cell line
1
Brodmann (1909) area 9
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive helper T cell
1
CD8-Positive T-Lymphocytes
1
Chondroid Chordoma
1
Crypt of Lieberkuhn
1
EAhy 926 cell
1
H1-hESC
1
Ishikawa
1
Rhabdoid Tumor of the Kidney
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
T-lymphoma cell line
1
Th17 cell
1
Uveal Melanoma
1
acute myeloid leukemia
1
adipose-derived stem cell
1
alveolar cell type II
1
amnion
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
4
August, 2017
2
September, 2022
1
February, 2021
Software used
6
chromhmm
1
macs
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
biosample_type!
cell line
organ_slims!
lymphoid tissue
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP