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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
22
heart
20
A549
19
brain
19
stomach
17
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
small intestine
14
adrenal gland
13
large intestine
13
left lung
13
muscle of back
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
right kidney
9
K562
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
MCF-7
8
embryonic stem cell
8
heart left ventricle
8
neural progenitor cell
7
adipocyte
7
adipose tissue
7
melanoma
7
spleen
6
fibroblast cell line
6
left cardiac atrium
5
HepG2
5
heart right ventricle
5
islet of Langerhans
5
layer of hippocampus
5
prostate cancer cell line
5
sigmoid colon
5
temporal lobe
4
GM12878
4
H1-hESC
4
HeLa-S3
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
muscle of trunk
4
neuroblastoma cell
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
retina
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
ascending aorta
3
cardiac muscle cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
liposarcoma
3
mesenchymal stem cell
3
mucosa of rectum
3
right cardiac atrium
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
thoracic aorta
3
tibial artery
3
triple-negative breast cancer
3
trophoblast
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NB4
2
NCI-H460 cell
2
NHEK
2
Normal Human Astrocytes
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PANC-1 cell
2
PC-3
2
PC-9
2
PFSK-1 cell
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SJSA1
2
SK-MEL-5 cell
2
SK-N-DZ
2
SK-N-SH_RA
2
SUDHL5
2
SUM-185PE cell
2
SW480
2
T-47D cell
2
T-lymphocyte
2
T47D
2
U-266 cell
2
U-87 MG
2
U2OS
2
VCaP cell
2
WI-38 cell
2
adult acute myeloid leukemia
Disease term
1
colorectal adenocarcinoma
Organ
2
intestine
2
large intestine
Life stage
1
adult
Date released
1
February, 2021
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_type!
primary cell
annotation_type!
gene expression
Showing 2 of 2 results
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Download
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP