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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
39
target gene predictions
8
gene expression
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
stem cell
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
17
muscle of arm
17
muscle of leg
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
left lung
13
liver
13
muscle of back
12
right lung
12
thymus
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipocyte
10
renal cortex interstitium
9
islet of Langerhans
9
left kidney
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
spleen
7
left cardiac atrium
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
caudate nucleus
6
coronary artery
6
heart right ventricle
6
retinal pigment epithelial cell
6
sigmoid colon
6
tibial artery
5
chondrocyte
5
gastrocnemius medialis
5
ovary
5
psoas muscle
5
right atrium auricular region
5
temporal lobe
5
thyroid gland
5
transverse colon
4
HepG2
4
Peyer's patch
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
layer of hippocampus
4
muscle of trunk
4
omental fat pad
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
cerebellum
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
mucosa of rectum
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SK-N-SH
2
SUDHL5
2
SW480
2
T47D
2
U-266 cell
2
WERI-Rb-1
2
Z-138
2
adipose-derived stem cell
2
bipolar neuron
2
cardiac muscle cell
2
cerebellar cortex
2
differentiating adipose-derived stem cell
2
embryonic facial prominence
2
endodermal cell
2
esophagus
2
fibroblast of cardiac tissue
2
germinal matrix
2
iPS DF 4.7 Cell Line
2
inferior parietal cortex
2
lower leg skin
2
mesendoderm
2
middle frontal gyrus
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
olfactory neurosphere cell line
2
pancreatic ductal cell
2
pancreatic stellate cell
2
parathyroid adenoma
Organ
3
embryo
Life stage
2
embryonic
Date released
1
August, 2017
1
June, 2020
1
September, 2022
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
biosample_type!
primary cell
Showing 3 of 3 results
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP