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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bigWig
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
24
retina
20
pigmented layer of retina
17
islet of Langerhans
17
kidney
17
neural progenitor cell
16
EndoC_BH1
11
cardiomyocytes
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
heart
7
subcutaneous adipose tissue
6
SGBS preadipocytes
6
embryonic stem cell
6
retinal pigment epithelial cell
5
adipocyte
5
adipose tissue
5
chondrocyte
5
liver
5
pancreas
5
pancreatic ductal cell
5
right atrium auricular region
5
tibial nerve
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
frontal cortex
4
heart left ventricle
4
omental fat pad
4
stomach
4
tibial artery
3
Ammon's horn
3
brain
3
caudate nucleus
3
cerebellum
3
hepatocyte(AFP)
3
occipital lobe
3
putamen
3
spleen
2
B cell
2
HepG2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
adipose-derived stem cell
2
adrenal gland
2
ascending aorta
2
body of pancreas
2
differentiating adipose-derived stem cell
2
endothelial cell
2
excitatory neuron
2
fibroblast of cardiac tissue
2
globus pallidus
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
left cardiac atrium
2
lower motor neuron
2
medulla oblongata
2
midbrain
2
muscle of leg
2
ovary
2
pancreatic stellate cell
2
pons
2
renal pelvis
2
smooth muscle cell of the coronary artery
2
spinal cord
2
superior temporal gyrus
2
testis
2
uterus
2
visceral abdominal adipose tissue
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SUDHL5
1
SW1116
1
SW480
1
Saos-2 cell
1
Schwann cell
1
T cell
1
T-47D cell
1
T84
1
U-266 cell
1
U-87 MG
Organ
3
brain
Life stage
2
fetal
Date released
1
February, 2020
1
January, 2020
1
June, 2020
Software used
2
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
primary cell
Showing 3 of 3 results
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Download
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP