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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
3
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
RNA-seq
1
DNase-seq
Available data
1
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
2
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
25
islet of Langerhans
12
subcutaneous adipose tissue
11
cardiomyocytes
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
kidney
9
progenitor cell of endocrine pancreas
8
H1-hESC
8
adipose tissue
8
liver
7
neural progenitor cell
6
lymphoblastoid cell line
6
right atrium auricular region
6
tibial nerve
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
coronary artery
5
frontal cortex
5
heart
5
putamen
5
tibial artery
4
body of pancreas
4
bone tissue
4
brain
4
caudate nucleus
4
cerebellum
4
heart left ventricle
4
omental fat pad
4
substantia nigra
3
amygdala
3
anterior cingulate cortex
3
ascending aorta
3
cerebellum (Hemisphere)
3
hepatocyte(AFP)
3
hypothalamus
3
nucleus accumbens
3
pancreatic ductal cell
3
retina
3
skeletal muscle tissue
3
skin of body
3
visceral abdominal adipose tissue
2
muscle of leg
2
Ammon's horn
2
C1 segment of cervical spinal cord
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
adrenal gland
2
blood
2
cartilage tissue
2
dorsolateral prefrontal cortex
2
gastrocnemius medialis(Muscle - Skeletal)
2
heart right ventricle
2
iPSC derived cell line
2
left cardiac atrium
2
left ventricle myocardium
2
lung
2
minor salivary gland
2
muscle
2
occipital lobe
2
ovary
2
pancreas
2
right lobe of liver
2
spleen
2
stomach
2
testis
2
uterus
2
vagina
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
abdominal aorta artery
1
adipocyte
1
aorta
1
aortic valve
1
bladder
1
breast
1
breast - mammary tissue
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cells - EBV-transformed lymphocytes
1
cerebellar hemisphere
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
diencephalon
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
endothelial cell
1
esophagus
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus muscularis mucosa
1
excitatory neuron
1
fallopian tube
1
globus pallidus
1
glomerular visceral epithelial cell
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
kidney - cortex
1
kidney - medulla
1
layer of hippocampus
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
medulla oblongata
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
metanephros
1
midbrain
1
middle frontal gyrus
1
mitral valve
1
muscle of arm
1
nephron tubule
1
parietal lobe
1
pituitary
1
pituitary gland
1
placenta
1
pons
1
prostate
1
prostate gland
1
pulmonary valve
1
purified protein and synthetic DNA oligo binding assay
1
renal cortex interstitium
1
renal glomerulus
1
renal pelvis
1
right cardiac atrium
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine
1
small intestine - terminal Ileum
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
spinal cord
1
stem cell
1
superior temporal gyrus
1
synovial joint
1
temporal lobe
1
thoracic aorta
1
thyroid
1
thyroid gland
1
transverse colon
1
tricuspid valve
1
whole blood
Organ
4
brain
Life stage
1
fetal
Date released
2
January, 2022
1
February, 2020
1
May, 2020
Software used
2
qTLtools
1
deltasvm
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
primary cell
Showing 4 of 4 results
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP