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Schema
Citing CMDGA
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Annotation type
37
candidate regulatory elements
21
chromatin state
20
target gene predictions
5
accessible chromatin
3
gene expression
3
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
3
Genetic variant effects
Annotation type Category
2
DNase-seq
1
SNP-SELEX
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
2
muscle of leg
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
coronary artery
2
heart
2
heart left ventricle
2
right atrium auricular region
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Preadipose SGBS cell line (adipocyte)
1
adipose tissue
1
ascending aorta
1
body of pancreas
1
brain
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
frontal cortex
1
globus pallidus
1
glomerular visceral epithelial cell
1
heart right ventricle
1
islet of Langerhans
1
kidney
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
occipital lobe
1
pancreas
1
pons
1
purified protein and synthetic DNA oligo binding assay
1
putamen
1
renal cortex interstitium
1
renal pelvis
1
retina
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
Organ
2
heart
Life stage
1
fetal
Date released
2
May, 2020
1
February, 2023
Software used
2
deltasvm
1
betacells_cytokines_t1d
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
biosample_type!
primary cell
Showing 3 of 3 results
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Download
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP