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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
14
target gene predictions
8
accessible chromatin
7
gene expression
2
histone modifications
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
8
cis-regulatory elements
Annotation type Category
7
ATAC-seq
1
DNase-seq
Available data
8
bed bed3+
7
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
7
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
22
retina
20
pigmented layer of retina
10
neural progenitor cell
8
EndoC_BH1
8
kidney
6
embryonic stem cell
6
islet of Langerhans
6
retinal pigment epithelial cell
5
chondrocyte
4
SGBS preadipocytes
4
adipocyte
4
liver
3
heart
3
pancreas
3
stomach
2
B cell
2
HepG2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
adipose-derived stem cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
fibroblast of cardiac tissue
2
medulla oblongata
2
midbrain
2
pancreatic ductal cell
2
pancreatic stellate cell
2
right atrium auricular region
2
spinal cord
2
spleen
2
tibial artery
2
tibial nerve
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SUDHL5
1
SW1116
1
SW480
1
Saos-2 cell
1
Schwann cell
1
T cell
1
T-47D cell
1
T84
1
U-266 cell
1
U-87 MG
1
U2OS
1
U937
1
WERI-Rb-1
1
WI-38 cell
1
Z-138
1
ZR-75-1 cell
1
acute myeloid leukemia
1
adipose tissue
1
adipose-derived mesenchymal stem cell
1
adrenal gland
1
bipolar neuron
1
brain
1
brain pericyte
1
breast epithelium
1
cardiac myocyte cell derived cell line
1
cardiac precursors
1
caudate nucleus
1
chorion membrane
1
choroid plexus epithelial cell
1
colon cancer cell line
1
cortex of kidney
1
crypt of Lieberkuhn
1
dermal fibroblast
1
dermis microvascular lymphatic vessel endothelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell
1
epithelial cell of prostate
1
erythroid cell
1
esophageal epithelial cell
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
excitatory neuron
1
eye
1
fibroblast cell line
1
fibroblast of the conjunctiva
1
foreskin keratinocyte
1
foreskin melanocyte
1
frontal cortex
1
gastrocnemius medialis
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
8
kidney
Date released
7
August, 2021
January, 2020
1
June, 2020
Software used
8
macs
Lab
7
Katalin Susztak, Upenn
1
AMP-T2D consortium
Project
8
AMP
RFA
7
AMP2
1
AMP
biosample_type!
primary cell
month_released!
January, 2020
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP