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Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
14
target gene predictions
10
accessible chromatin
7
gene expression
2
histone modifications
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
RNA-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
15
islet of Langerhans
9
breast cancer cell
8
liver
8
lymphoblastoid cell line
7
melanoma
6
fibroblast cell line
6
subcutaneous adipose tissue
5
adipose tissue
5
prostate cancer cell line
4
glioblastoma multiforme cancer stem cell
4
neural progenitor cell
4
neuroblastoma cell
3
HepG2
3
MCF-7
3
T-cell acute lymphoblastic leukemia
3
Tumor-derived cell line
3
acute myeloid leukemia
3
brain
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
iPSC derived cell line
3
keratinocyte
3
liposarcoma
3
prostate gland
3
putamen
3
skin of body
3
spinal cord
3
substantia nigra
3
synovial sarcoma cell
3
triple-negative breast cancer
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
H1-hESC
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
IMR-90
2
Jurkat
2
K562
2
Mantle cell lymphoma
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
PANC-1 cell
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-lymphocyte
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adult acute myeloid leukemia
2
amygdala
2
anterior cingulate cortex
2
blood
2
cardiac muscle cell
2
cartilage tissue
2
caudate nucleus
2
cerebellum
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
coronary artery
2
cortex of kidney
2
diffuse large B-cell lymphoma
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
frontal cortex
2
gastric cancer cell
2
glioblastoma cell
2
hypothalamus
2
immortal neural cell line cell
2
kidney
2
layer of hippocampus
2
lung fibroblast cell line
2
metastatic melanoma
2
muscle
2
neuroblastoma cell line
2
neuronal stem cell
2
nucleus accumbens
2
omental fat pad
2
osteosarcoma
2
pancreas
2
pancreatic cancer cell
2
pancreatic cell line
2
placenta
2
prostate derived cell line
2
retina
2
right atrium auricular region
2
skeletal muscle tissue
2
spleen
2
testis
2
tibial artery
2
tibial nerve
1
143B
1
22Rv1
1
451Lu cell
1
501A
1
697 cell
1
769-P cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A2780 cell
1
AGS cell
1
ALL-SIL cell
1
Ammon's horn
1
AsPC-1 cell
1
B-CPAP cell
1
B-cell acute lymphoblastic leukemia
1
B-cell lymphoma cell
1
B-lymphoblast
1
B-lymphoblastoid cell line
1
B-lymphocyte
1
BCBL-1 cell
1
BEAS-2B cell
1
BEL-7402 cell
1
BG03
1
BICR 31
1
BJAB cell
1
BL-2 cell
1
BL-41 cell
1
BPE cell
1
BT-20 cell
1
BT-474 cell
1
BT-549 cell
1
BeWo cell
1
BxPC-3 cell
1
C1 segment of cervical spinal cord
1
C666-1 cell
1
CA46 cell
1
CAL-51 cell
1
CCLP-1 cell
1
CCRF-CEM cell
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHLA-90 cell
CHP-134 cell
1
CMK
1
COLO 741 cell
1
COLO-800 cell
1
COLO-829 cell
1
COLO205
1
CTV-1 cell
1
CaSki cell
1
Caki-1 cell
1
Calu-1 cell
1
Calu-3 cell
1
D283 Med cell
Organ
2
kidney
Date released
1
August, 2021
1
February, 2021
Software used
1
macs
1
matrix-eQTL
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
biosample_type!
primary cell
biosample_term_name!
CHP-134 cell
Showing 2 of 2 results
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Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR715ILK
released
Annotation file set
: Binding sites annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP