Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
69
heart
67
stomach
65
kidney
61
HeLa-S3
55
brain
53
H1-hESC
52
lung
51
muscle of arm
48
adrenal gland
48
small intestine
46
neural progenitor cell
46
placenta
44
A549
44
islet of Langerhans
43
large intestine
43
muscle of leg
42
liver
41
muscle of back
39
left lung
37
retina
37
thymus
35
K562
34
right lung
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
28
spleen
27
left kidney
26
heart left ventricle
25
adipose tissue
23
EndoC_BH1
21
MCF-7
21
subcutaneous adipose tissue
21
tibial nerve
20
body of pancreas
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
adipocyte
19
caudate nucleus
19
pancreas
17
coronary artery
17
ovary
17
right atrium auricular region
17
sigmoid colon
16
HepG2
16
induced pluripotent stem cell
16
substantia nigra
15
GM12878
15
H9
15
omental fat pad
15
psoas muscle
15
transverse colon
14
gastrocnemius medialis
14
testis
14
thyroid gland
14
tibial artery
13
frontal cortex
13
heart right ventricle
13
layer of hippocampus
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
embryonic stem cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
endocrine pancreas
10
gastric cancer cell
10
left renal cortex interstitium
10
progenitor cell of endocrine pancreas
10
right renal pelvis
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
mesenchymal stem cell
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
pituitary stalk
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
KARPAS-422 cell
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
lower leg skin
7
mesendoderm
7
neuronal stem cell
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
SK-N-MC
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
cingulate gyrus
6
endometrium adenocarcinoma
6
eye
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
tongue
6
uterus
5
C1 segment of cervical spinal cord
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
NT2-D1 cell
5
OCI-LY1
5
PC-3
5
PC-9
5
RPMI8226
5
Rh-4 cell
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
5
SW480
5
WERI-Rb-1
5
WI38
5
chorion membrane
5
endodermal cell
5
limb
5
mucosa of rectum
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
urinary bladder
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
biosample_type!
primary cell
files.file_type!
bed bed9
files.file_type!!
bed bed9
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP