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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
42
large intestine
17
sigmoid colon
14
transverse colon
6
colonic mucosa
6
mucosa of rectum
6
muscle layer of colon
5
HT-29
4
SW480
3
HCT116
2
HCT-116 cell
2
RKO
2
colon epithelial cell
2
rectum smooth muscle tissue
1
Caco-2
1
LoVo
1
rectal smooth muscle tissue
Disease term
2
colorectal adenocarcinoma
Organ
4
intestine
4
large intestine
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
primary cell
Showing 4 of 4 results
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Download
FileSet
DSR211KZE
released
Annotation file set
: Candidate regulatory elements for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XEI
released
Annotation file set
: Target gene predictions for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR047FTW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SW480
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118XAD
released
Annotation file set
: Accessible chromatin annotation for Digestive tract SW 480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP