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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
12
candidate regulatory elements
8
target gene predictions
5
accessible chromatin
4
gene expression
3
chromatin state
1
eQTL
Annotation Category
8
Target gene links
Annotation type Category
4
DNase-seq
3
ATAC-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
2
pCHi-C
1
snATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
tissue
Biosample term
55
HeLa-S3
38
H1-hESC
23
K562
19
A549
19
CD14-positive monocyte
19
HFFc6
14
common myeloid progenitor, CD34-positive
10
B cell
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
9
CD4-positive, alpha-beta memory T cell
9
adrenal gland
8
GM12878
8
adipose tissue
8
liver
8
psoas muscle
8
stomach
7
CD8-positive, alpha-beta memory T cell
7
H9
7
endothelial cell
7
lymphocyte
7
sigmoid colon
7
spleen
6
MCF-7
6
adipocyte
6
dendritic cell
6
mononuclear cell
6
olfactory receptor cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
5
body of pancreas
5
gastrocnemius medialis
5
heart left ventricle
5
keratinocyte
5
natural killer cell
5
ovary
5
pancreas
5
small intestine
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
aorta
4
astrocyte
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
heart right ventricle
4
iPSC derived cell line
4
macrophage
4
mammary gland epithelial cell
4
pancreatic delta cell
4
regulatory T cell
4
thymus
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
heart
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
lung
3
monocyte
3
naive T cell
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
tibial nerve
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HAP-1
2
HT-29
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
enteric smooth muscle cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney
2
kidney tubule cell
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
osteoblast
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
testis
2
thoracic aorta
2
tibial artery
2
trophoblast cell
2
type II pneumocyte
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
Organ
3
lung
Life stage
embryonic
1
adult
1
child
Date released
2
May, 2021
2
September, 2022
1
January, 2021
1
March, 2020
1
May, 2020
1
November, 2021
Software used
3
abc
2
r
1
chicago
1
cicero
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
6
AMP
1
ENCODE
1
T1D
RFA
6
AMP
1
ENCODE3
1
T1D
biosample_type!
stem cell
relevant_life_stage!
embryonic
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR417JTW
released
Annotation file set
: Target gene predictions for BSS01201 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696RKA
released
Annotation file set
: Target gene predictions for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR063XFX
released
Annotation file set
: A target gene prediction annotation in Human Lung of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP