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Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
6
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
gene expression
2
histone modifications
Annotation Category
6
Target gene links
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
52
HeLa-S3
39
H1-hESC
19
HFFc6
17
K562
16
CD14-positive monocyte
10
pericyte cell
10
pituitary stalk
8
H9
7
GM12878
7
endothelial cell
7
lymphocyte
7
smooth muscle cell
7
trophoblast cell
6
CD4-positive, alpha-beta memory T cell
6
dendritic cell
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
adipocyte
5
keratinocyte
5
neural progenitor cell
4
B cell
4
CyT49
4
HUES8
4
astrocyte
4
colon epithelial cell
4
common myeloid progenitor, CD34-positive
4
endothelial cell of umbilical vein
4
fibroblast
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
macrophage
3
CD4-positive, alpha-beta T cell
3
HepG2
3
SK-N-SH
3
T-helper 17 cell
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
mesenchymal stem cell
3
mesendoderm
3
monocyte
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
skin fibroblast
3
type B pancreatic cell
2
22Rv1
2
A673
2
BJAB cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
H7-hESC
2
HCT116
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
NAMALWA cell
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cortical cell of adrenal gland
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
osteoblast
2
pancreatic alpha cell
2
pancreatic beta cell
2
regulatory T cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
type II pneumocyte
1
A549
1
AG04449 cell
1
AG04450 cell
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
CWRU1
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
HAP-1
1
HCT-116 cell
1
HEK293
1
HEK293T
1
HK-2 cell
1
HT-29
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
NCCIT cell
1
NCI-H460 cell
1
NT2-D1 cell
1
OCI-LY7
1
SJCRH30
1
SK-N-MC
1
T cell
1
T-helper 1 cell
1
T-helper 2 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
basal cell
1
basal cell of epidermis
1
bipolar neuron
1
brain microvascular endothelial cell
1
cardiac endothelial cell
1
cardiac mesoderm primordium
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
colon carcinoma
1
colon goblet cell
1
conventional dendritic cell
1
dermis blood vessel endothelial cell
1
eccrine cell
1
ectodermal cell
1
embryonic stem cell
1
endocardial cell
Organ
2
intestine
Life stage
adult
2
unknown
Date released
2
November, 2021
2
September, 2022
1
May, 2020
1
May, 2021
Software used
3
abc
2
r
1
chicago
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
2
ENCODE
RFA
4
AMP
2
ENCODE3
biosample_type!
tissue
relevant_life_stage!
adult
Showing 6 of 6 results
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Download
FileSet
DSR354QVQ
released
Annotation file set
: Target gene predictions for BSS01345 B cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603FUR
released
Annotation file set
: Target gene predictions for BSS00093 B cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR814KVL
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR483TPA
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR608ZFL
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of B cell
Lab:
AMP-T2D consortium
Project:
AMP