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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
63
HeLa-S3
60
A549
54
common myeloid progenitor, CD34-positive
52
H1-hESC
51
CD8-positive, alpha-beta T cell
47
neural progenitor cell
44
B cell
42
hematopoietic multipotent progenitor cell
39
K562
38
endothelial cell
36
hepatocyte
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
macrophage
30
fibroblast
27
regulatory T cell
25
adipocyte
25
smooth muscle cell
23
MCF-7
23
T-helper 1 cell
23
natural killer cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
T cell
22
epithelial cell of proximal tubule
22
pericyte cell
21
T-helper 17 cell
21
foreskin keratinocyte
21
glomerular endothelial cell
21
pancreatic ductal cell
19
HFFc6
19
mononuclear cell
18
endothelial cell of umbilical vein
18
mesenchymal stem cell
18
pancreatic beta cell
17
T-helper 2 cell
17
astrocyte
17
pancreatic alpha cell
16
H9
16
induced pluripotent stem cell
16
keratinocyte
16
pancreatic acinar cell
15
CD4-positive, alpha-beta T cell
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
neutrophil
15
pancreatic delta cell
14
GM12878
14
HepG2
14
cardiac muscle cell
14
embryonic stem cell
14
osteoblast
13
excitatory neuron
13
fibroblast of lung
13
mammary gland epithelial cell
13
neurosphere
13
retinal pigment epithelial cell
13
skeletal muscle myoblast
13
skeletal muscle satellite cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
breast cancer cell
11
fibroblast of dermis
11
glomerular visceral epithelial cell
10
bronchial epithelial cell
10
epithelial cell of prostate
10
kidney tubule cell
10
lymphoblastoid cell line
10
lymphocyte
9
22Rv1
9
Rhabdomyosarcoma
9
SK-N-DZ
9
cardiomyocytes
9
endothelial cell of hepatic sinusoid
9
progenitor cell of endocrine pancreas
9
skin fibroblast
8
NAMALWA cell
8
SK-N-SH
8
choroid plexus epithelial cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
erythroblast
8
gastric cancer cell
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
KARPAS-422 cell
7
LNCaP clone FGC
7
MM.1S
7
OCI-LY7
7
PC-9
7
T47D
7
cardiomyocytes (cardiac muscle cell)
7
endodermal cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
kidney glomerular epithelial cell
7
memory B cell
7
mesendoderm
7
neuroblastoma cell
7
renal cortical epithelial cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
GM19240
6
GM23248
6
H7-hESC
6
HCT116
6
HL-60
6
LHCN-M2
6
LoVo cell
6
MG63
6
RWPE1
6
SGBS preadipocytes
6
WI38
6
cardiac precursors (cardiac muscle cell)
6
dermis lymphatic vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
6
mature neutrophil
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
pancreatic stellate cell
6
type I muscle cell
5
cardiac fibroblast
5
A172
5
A673
5
ACHN
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Caki2
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM04503
5
GM04504
5
GM10248
5
GM10266
5
GM12875
5
GM19238
5
GM19239
5
Glomerular Capillary Endothelial Cell
5
H4
5
HUES6
5
HUES8
5
HuH-7
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Jurkat
5
KBM-7
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_type!
tissue
annotation_type!
binding sites
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP