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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
54
A549
39
common myeloid progenitor, CD34-positive
30
hematopoietic multipotent progenitor cell
27
CD4-positive, alpha-beta memory T cell
24
B cell
21
CD8-positive, alpha-beta memory T cell
18
K562
18
mononuclear cell
15
MCF-7
15
trophoblast cell
12
CD14-positive monocyte
12
T cell
12
foreskin keratinocyte
12
neural progenitor cell
9
HeLa-S3
9
T-helper 1 cell
9
T-helper 17 cell
9
T-helper 2 cell
9
endometrium adenocarcinoma
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
fibroblast of lung
9
immortal human breast epithelial cell line cell
9
mammary gland epithelial cell
9
naive T cell
9
natural killer cell
9
neurosphere
9
regulatory T cell
7
HepG2
6
22Rv1
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
T47D
6
adipocyte
6
bronchial epithelial cell
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
endothelial cell of umbilical vein
6
epithelial cell of prostate
6
fibroblast of breast
6
foreskin fibroblast
6
hepatocyte
6
keratinocyte
6
kidney tubule cell
6
mesenchymal stem cell
6
muscle cell
6
myoepithelial cell of mammary gland
6
neutrophil
6
skeletal muscle myoblast
6
skin fibroblast
3
8988T
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO829
3
CWRU1
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
H7-hESC
3
H9
3
HAP-1
3
HCT116
3
HEK293
3
HEK293T
3
HK-2 cell
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
HuH-7
3
HuH-7.5
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
L1-S8R
3
LHCN-M2
3
LoVo cell
3
Loucy
3
M059J
3
MG63
3
MM.1S
3
NB4
3
NCI-H226 cell
3
NCI-H460 cell
3
NCI-H929
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
3
SW480
3
UCSF-4
3
VCaP cell
3
WERI-Rb-1
3
WI38
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic endothelial cell
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
bipolar neuron
3
brain microvascular endothelial cell
3
cardiac mesoderm primordium
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
colon carcinoma
3
colon epithelial cell
3
ectodermal cell
3
epidermal melanocyte
3
epithelial cell of amnion
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
foreskin melanocyte
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 4.7 Cell Line
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
Life stage
3
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
tissue
Showing 3 of 3 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP