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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
116
monocyte
58
HeLa-S3
48
CD8-positive, alpha-beta T cell
44
H1-hESC
36
neural progenitor cell
32
fibroblast
30
endothelial cell
30
macrophage
29
K562
28
common myeloid progenitor, CD34-positive
26
A549
26
B cell
25
hepatocyte
23
CD14-positive monocyte
22
hematopoietic multipotent progenitor cell
21
smooth muscle cell
20
adipocyte
20
breast cancer cell
20
pericyte cell
19
HFFc6
17
embryonic stem cell
17
keratinocyte
16
MCF-7
16
T cell
16
endothelial cell of hepatic sinusoid
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
HepG2
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
14
CD4-positive, alpha-beta memory T cell
14
GM12878
14
H9
14
natural killer cell
14
regulatory T cell
14
retinal pigment epithelial cell
13
astrocyte
13
foreskin keratinocyte
13
mesenchymal stem cell
12
excitatory neuron
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
pancreatic ductal cell
12
skeletal muscle myoblast
12
trophoblast cell
11
erythroblast
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
pancreatic delta cell
9
skeletal muscle satellite cell
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
T-helper 1 cell
8
fibroblast cell line
8
fibroblast of cardiac tissue
8
mammary gland epithelial cell
8
pituitary stalk
7
CD4-positive helper T cell
7
HEK293
7
IMR-90
7
Jurkat
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
lymphocyte
7
mature neutrophil
7
mesendoderm
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
MM.1S
6
OCI-LY7
6
PC-9
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-MC
6
SK-N-SH
6
T-helper 17 cell
6
chondrocyte
6
colon epithelial cell
6
epithelial cell of prostate
6
foreskin melanocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mononuclear cell
6
neuroblastoma cell line
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
LHCN-M2
5
LoVo cell
5
MG63
5
NAMALWA cell
5
PC-3
5
RPMI8226
5
RWPE1
5
SK-N-DZ
5
SW480
5
T-cell acute lymphoblastic leukemia
5
T-helper 2 cell
5
acute myeloid leukemia
5
dermis blood vessel endothelial cell
5
enterocyte
5
fibroblast of dermis
5
glutamatergic neuron
5
hepatic stellate cell
5
neurosphere
5
osteosarcoma
5
prostate cancer cell line
5
renal cortical epithelial cell
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
type I muscle cell
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT116
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KBM-7
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
NT2-D1 cell
4
OCI-LY1
4
PANC-1 cell
4
RS4-11 cell
4
SJSA1
4
SK-N-SH_RA
4
T-cell
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
endodermal cell
4
erythroid cell
4
esophageal squamous cell carcinoma
4
fibroblast of villous mesenchyme
4
glomerular endothelial cell
4
kidney tubule cell
4
mast cell
4
memory B cell
4
mesodermal cell
4
myoepithelial cell of mammary gland
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_type!
tissue
software_used.software.name!
r
Showing 7 of 7 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP