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Schema
Citing CMDGA
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Annotation type
86
histone modifications
18
accessible chromatin
15
gene expression
4
eQTL
2
hQTL
2
target gene predictions
1
binding sites
1
meQTL
1
sQTL
Annotation Category
2
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
19
A549
19
CD14-positive monocyte
19
HFFc6
14
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
9
B cell
9
CD4-positive, alpha-beta memory T cell
8
GM12878
8
H9
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell
7
lymphocyte
7
smooth muscle cell
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
mononuclear cell
6
olfactory receptor cell
5
keratinocyte
5
natural killer cell
5
neural progenitor cell
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T cell
4
astrocyte
4
colon epithelial cell
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
pancreatic delta cell
4
regulatory T cell
3
HCT116
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
macrophage
3
mesendoderm
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
skeletal muscle myoblast
3
skin fibroblast
3
type B pancreatic cell
2
22Rv1
2
A673
2
BJAB cell
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
fibroblast of breast
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
memory B cell
2
monocyte
2
muscle cell
2
myoepithelial cell of mammary gland
2
neutrophil
2
osteoblast
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
type II pneumocyte
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM23248
1
GM23338
1
H4
1
H54
1
HCT-116 cell
1
HEK293
1
HEK293T
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT1080
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
HuH-7
1
HuH-7.5
1
KBM-7
1
KMS-11
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LHCN-M2
Date released
1
January, 2021
1
May, 2021
Software used
1
abc
chicago
1
cicero
Lab
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
biosample_type!
tissue
software_used.software.name!
chicago
biosample_type!!
tissue
Showing 2 of 2 results
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D