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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
29
endothelial cell
26
fibroblast
19
macrophage
19
pericyte cell
19
smooth muscle cell
16
endothelial cell of hepatic sinusoid
15
CD14-positive monocyte
14
hepatocyte
13
pancreatic acinar cell
13
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic delta cell
12
adipocyte
12
excitatory neuron
12
pancreatic ductal cell
10
astrocyte
10
pituitary stalk
9
skeletal muscle fiber
8
T cell
8
induced pluripotent stem cell
7
CD8-positive, alpha-beta T cell
7
dendritic cell
7
keratinocyte
7
pancreatic stellate cell
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
B cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
inhibitory neuron
5
mesenchymal stem cell
5
natural killer cell
5
pancreatic endothelial cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
luminal epithelial cell of mammary gland
memory B cell
4
mesothelial cell
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
megakaryocyte
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
EndoC_BH1
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mammary epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach neuroendocrine cell
Date released
2
January, 2021
1
May, 2021
Software used
1
abc
1
cicero
1
macs
Lab
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
biosample_type!
tissue
biosample_term_name!
memory B cell
lab.title!
AMP-T2D consortium
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D