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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
128
monocyte
54
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
36
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
26
regulatory T cell
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
21
hepatocyte
20
T-helper 17 cell
20
endothelial cell of umbilical vein
20
glomerular endothelial cell
20
mononuclear cell
19
foreskin keratinocyte
18
trophoblast cell
17
T-helper 2 cell
17
natural killer cell
17
osteoblast
16
T cell
16
fibroblast of lung
16
foreskin fibroblast
16
skeletal muscle myoblast
15
neutrophil
14
pancreatic ductal cell
13
CD4-positive, alpha-beta T cell
13
keratinocyte
13
macrophage
13
mammary epithelial cell
13
neurosphere
12
bronchial epithelial cell
12
endothelial cell
12
fibroblast of dermis
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic beta cell
11
mammary gland epithelial cell
11
pancreatic alpha cell
10
dermis blood vessel endothelial cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
pancreatic acinar cell
10
pancreatic delta cell
9
epithelial cell of prostate
9
fibroblast
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
7
skeletal muscle satellite cell
7
skin fibroblast
6
T-cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney interstitial cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
5
alternatively activated macrophage
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
memory B cell
5
mesangial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
inflammatory macrophage
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Ishikawa
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
3
mammary stem cell
3
mesenchymal stem cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic quiescent stellate cell
3
pericyte cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
smooth muscle cell
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
basal cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
erythroid progenitor cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
myeloid dendritic cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
Organ
5
blood vessel
5
epithelium
5
kidney
5
vasculature
Life stage
4
embryonic
1
fetal
Date released
3
September, 2022
1
January, 2020
1
May, 2020
Software used
2
r
1
chromhmm
1
deltasvm
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
tissue
Showing 5 of 5 results
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Download
FileSet
DSR302SLS
released
Annotation file set
: Candidate regulatory elements for BSS01077 kidney capillary endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR668BHK
released
Annotation file set
: Target gene predictions for BSS01077 kidney capillary endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR701BDE
released
Annotation file set
: Chromatin states for BSS01077 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR528XCA
released
Annotation file set
: Variant allelic effects of kidney capillary endothelial cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR479BAK
released
Annotation file set
: Accessible chromatin annotation of kidney capillary endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP