Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
candidate regulatory elements
8
target gene predictions
5
binding sites
4
accessible chromatin
4
chromatin state
3
histone modifications
Annotation Category
8
Target gene links
Annotation type Category
6
DNase-seq
4
ChIP-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
2
HiC
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
33
tissue
8
cell line
3
primary cell
Biosample term
3
HCT116
2
HT-29
1
HCT-116 cell
1
SW480
1
colon epithelial cell
Disease term
3
colorectal adenocarcinoma
Organ
64
embryo
57
bodily fluid
55
blood
55
uterus
26
lung
22
brain
15
skin of body
10
bone element
10
pituitary gland
10
prostate gland
9
lymph node
8
intestine
8
large intestine
8
mammary gland
7
kidney
5
liver
5
pancreas
4
musculature of body
4
penis
3
connective tissue
2
epithelium
2
lymphoid tissue
1
extraembryonic component
1
eye
1
gonad
1
limb
1
mouth
1
placenta
1
testis
Life stage
3
adult
1
unknown
Date released
4
September, 2022
2
February, 2024
2
May, 2021
Software used
4
r
2
abc
Lab
6
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XEI
released
Annotation file set
: Target gene predictions for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR292ELJ
released
Annotation file set
: Target gene predictions for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR344FOH
released
Annotation file set
: Target gene predictions for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP