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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
60
HeLa-S3
51
H1-hESC
43
A549
33
K562
23
EndoC_BH1
20
MCF-7
20
breast cancer cell
19
HFFc6
15
H9
14
HepG2
13
GM12878
12
lymphoblastoid cell line
12
neuroblastoma cell
11
gastric cancer cell
10
Rhabdomyosarcoma
10
pituitary stalk
9
fibroblast cell line
9
liposarcoma
9
lymphocyte
8
22Rv1
8
B-lymphoblastoid cell line
8
SK-N-DZ
8
diffuse intrinsic pontine glioma
8
induced pluripotent stem cell
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-SH
7
iPSC derived cell line
7
melanoma
6
CMK
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HL-60
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
PC-3
6
RPMI8226
6
RWPE1
6
Rh-4 cell
6
SK-N-MC
6
SW480
6
WERI-Rb-1
6
WI38
6
acute myeloid leukemia
6
endometrium adenocarcinoma
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
immortal human breast epithelial cell line cell
6
prostate cancer cell line
6
squamous cell lung carcinoma
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
Chondroid Chordoma
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
GM12875
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
NT2-D1 cell
5
OCI-LY1
5
RS4-11 cell
5
SJSA1
5
T47D
5
U937
5
dermal fibroblast
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
A172
4
A673
4
ACHN
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM08714
4
GM12891
4
GM12892
4
H4
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
L1-S8
4
M059J
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
OCI-LY3
4
Panc1
4
RCC 7860
4
RKO
4
RPMI7951
4
SJCRH30
4
SK-MEL-5
4
Tumor-derived cell line
4
VCaP cell
4
cardiac muscle cell
4
glioblastoma cell
4
glioma cell
4
iPS DF 19.11
4
immortal neural cell line cell
4
keratinocyte
4
lung fibroblast cell line
4
macrophage
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
4
smooth muscle cell of the coronary artery
3
786-O cell
3
A-673 cell
3
ACC112
3
AG08396 cell
3
BJAB cell
3
C4-2B
3
COLO-320 cell
3
D341 Med cell
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
G-401 cell
3
G401
3
GM03348
3
GM12873
3
GM13976
3
GM13977
3
GM18505
3
GM19099
3
GM19193
3
GM20000
3
GM23338
3
H54
3
HAC cell
3
HBMEC cell
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HeLa cell
3
KMS-11
3
KOPT-K1
3
Kasumi-1
3
L1-S8R
3
Loucy
3
MCF 10A
3
MCF 10A cell
3
MOLM-13 cell
3
Myoblasts
3
NB-4 cell
3
NB4
3
NCI-H226 cell
3
NCI-H460 cell
3
NCI-H929
3
NHBE cell
3
NHDF cell
3
NHEK
3
Normal Human Astrocytes
3
OCI-AML3
3
PA-TU-8988T cell
3
PANC-1 cell
3
REH cell
3
RWPE2
3
SAEC
Disease term
2
clear cell renal carcinoma
Organ
4
kidney
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
chromhmm
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
chromhmm
Showing 4 of 4 results
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Download
FileSet
DSR461KQV
released
Annotation file set
: Candidate regulatory elements for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797XHP
released
Annotation file set
: Target gene predictions for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162JPE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caki2
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035CQD
released
Annotation file set
: Accessible chromatin annotation for Kidney Caki-2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP