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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
20
breast cancer cell
12
neuroblastoma cell
11
gastric cancer cell
10
EndoC_BH1
10
Rhabdomyosarcoma
9
HepG2
9
MCF-7
9
liposarcoma
8
diffuse intrinsic pontine glioma
8
fibroblast cell line
7
B-lymphoblastoid cell line
7
melanoma
7
squamous cell lung carcinoma
6
A549
6
H9
6
Rh-4 cell
6
acute myeloid leukemia
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
lymphoblastoid cell line
6
prostate cancer cell line
5
Chondroid Chordoma
5
Ewing sarcoma
5
HEK293
5
Jurkat
5
LNCAP
5
RS4-11 cell
5
dermal fibroblast
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
22Rv1
4
CMK
4
COLO205
4
GM06990
4
GM12864
4
GM12865
4
GM12878
4
GM23248
4
HAP-1
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
IMR-90
4
K562
4
LHCN-M2
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
OCI-LY7
4
PC-3
4
PC-9
4
RKO
4
RPMI8226
4
RWPE1
4
SK-N-DZ
4
SK-N-MC
4
SW480
4
Tumor-derived cell line
4
WERI-Rb-1
4
WI38
4
cardiac muscle cell
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
keratinocyte
4
lung fibroblast cell line
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
3
786-O cell
3
A-673 cell
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
Daoy
3
G-401 cell
3
GM10248
3
GM10266
3
GM12873
3
GM12875
3
GM13976
3
GM13977
3
GM19240
3
GM20000
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HUES6
3
HeLa cell
3
HuH-7
3
KARPAS-422 cell
3
KBM-7
3
Kasumi-1
3
LoVo cell
3
MCF 10A
3
MDA-MB-231 cell
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY1
3
PA-TU-8988T cell
3
PANC-1 cell
3
REH cell
3
SAEC
3
SJSA1
3
SK-N-SH_RA
3
Saos-2 cell
3
T-47D cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WI-38 cell
3
ZR-75-1 cell
3
cardiac myocyte cell derived cell line
3
choroid plexus epithelial cell
3
colon cancer cell line
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
hESC H9
3
hematopoietic cell
3
lymphoblast
3
macrophage
3
multiple myeloma cell line
3
prostate derived cell line
3
renal proximal tubule epithelial cell
3
smooth muscle cell of the coronary artery
3
spinal cord
3
umbilical cord mesenchymal stem cell line cell
2
143B
2
501A
2
697 cell
2
769-P cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A172
2
ACHN
2
AG10803
2
AGS cell
2
ALL-SIL cell
2
AsPC-1 cell
2
B-lymphocyte
2
BCBL-1 cell
2
BEAS-2B cell
2
BG03
2
BT-474 cell
2
BT-549 cell
2
Burkitt's lymphoma
2
BxPC-3 cell
2
C666-1 cell
2
CA46 cell
2
CAL-51 cell
2
CCRF-CEM cell
2
CFPAC-1 cell
2
CHL-1 cell
2
CHP-134 cell
2
COLO 741 cell
2
COLO-829 cell
2
CTV-1 cell
2
CaSki cell
2
Caki-1 cell
2
Caki2
2
Calu-1 cell
2
Calu-3 cell
2
D283 Med cell
2
DK cell
2
DLD-1 cell
2
DND-41 cell
2
DOHH-2 cell
2
DU 145 cell
2
Daudi
2
Detroit562
2
ECC-1
2
EOL-1 cell
2
FaDu cell
Organ
3
lymph node
Life stage
1
unknown
Date released
2
February, 2021
1
June, 2020
Software used
2
macs
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR411HKF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM13977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR500XIS
released
Annotation file set
: Binding sites annotation for Blood GM13977 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR464VAI
released
Annotation file set
: Accessible chromatin annotation for Blood GM13977 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP