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Citing CMDGA
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Annotation type
candidate regulatory elements
binding sites
1
chromatin state
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
58
HeLa-S3
50
H1-hESC
39
A549
32
K562
22
EndoC_BH1
19
HFFc6
14
MCF-7
12
GM12878
12
HepG2
11
breast cancer cell
10
lymphoblastoid cell line
10
pituitary stalk
9
H9
9
Rhabdomyosarcoma
9
gastric cancer cell
9
lymphocyte
8
induced pluripotent stem cell
8
neuroblastoma cell
7
B-lymphoblastoid cell line
6
KARPAS-422 cell
6
NAMALWA cell
6
SK-N-DZ
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
liposarcoma
6
squamous cell lung carcinoma
5
22Rv1
5
Chondroid Chordoma
5
CyT49
5
GM18507
5
GM19240
5
H7-hESC
5
HAP-1
5
HT-29
5
HUES8
5
IMR-90
5
Jurkat
5
LoVo cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
SK-N-SH
5
esophageal adenocarcinoma
5
hESC cell
5
melanoma cell
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CMK
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19238
4
GM19239
4
GM23248
4
HCT116
4
HEK293
4
HL-60
4
HuH-7
4
LHCN-M2
4
LNCaP clone FGC
4
MG63
4
NT2-D1 cell
4
PC-3
4
RPMI8226
4
RWPE1
4
Rh-4 cell
4
SK-N-MC
4
SW480
4
T47D
4
U937
4
WERI-Rb-1
4
fibroblast of cardiac tissue
4
osteosarcoma
3
A172
3
A673
3
ACHN
3
AG08396 cell
3
COLO205
3
Caki2
3
Daoy
3
Ewing sarcoma
3
GM03348
3
GM04503
3
GM04504
3
GM10248
3
GM10266
3
GM12875
3
GM12891
3
GM12892
3
H4
3
HCT-116 cell
3
HK-2 cell
3
HUES6
3
KBM-7
3
L1-S8
3
L1-S8R
3
LNCAP
3
M059J
3
MDA-MB-231 cell
3
NCCIT cell
3
NCI-H226 cell
3
OCI-LY1
3
Panc1
3
RCC 7860
3
RPMI7951
3
RS4-11 cell
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
U-266 cell
3
VCaP cell
3
Z-138
3
acute myeloid leukemia
3
esophageal squamous cell carcinoma
3
fibroblast cell line
3
glioblastoma cell
3
glioma cell
3
iPS DF 19.11
3
lymphoblast
3
macrophage
3
renal cell carcinoma
3
smooth muscle cell of the coronary artery
3
urothelium cell line
2
786-O cell
2
8988T
2
A-673 cell
2
ACC112
2
AG08395 cell
2
AG20443
2
BJAB cell
2
C4-2B
2
COLO829
2
CWRU1
2
D341 Med cell
2
DG-75 cell
2
DND-41
2
DOHH2
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
ESC derived cell line
2
G-401 cell
2
G401
2
GM08714
2
GM18505
2
GM19099
2
GM19193
2
GM23338
2
H54
2
HAC cell
2
HBMEC cell
2
HEK293T
2
HPDE6-E6E7
2
HS-27A
2
HS-5
2
HS-SY-2 cell
2
HT1080
2
HTR-8/Svneo
2
HUES48
2
HUES64
2
HeLa cell
2
HuH-7.5
2
JVM-2 cell
2
KMS-11
2
KOPT-K1
2
Kasumi-1
2
Loucy
2
MCF 10A cell
2
MCF10A-Er-Src cell
2
MIN6
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Myoblasts
2
NB-4 cell
2
NB4
2
NCI-H460 cell
2
NCI-H929
2
NHBE cell
2
NHDF cell
2
NHEK
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY3
2
PA-TU-8988T cell
2
PANC-1 cell
2
REH cell
2
RKO
2
RWPE2
2
Rh-5 cell
2
SAEC
Disease term
2
large-cell immunoblastic lymphoma
Organ
2
bone element
Life stage
2
adult
Date released
2
September, 2022
Software used
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
binding sites
candidate regulatory elements
Showing 2 of 2 results
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Download
FileSet
DSR024ZCA
released
Annotation file set
: Target gene predictions for BSS01390 OCI-LY3 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267BLF
released
Annotation file set
: Chromatin states for BSS01390 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP