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Schema
Citing CMDGA
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Annotation type
2
histone modifications
1
binding sites
1
candidate regulatory elements
1
chromatin state
Annotation Category
Target gene links
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
43
A549
22
EndoC_BH1
20
MCF-7
20
breast cancer cell
18
K562
14
H1-hESC
14
HepG2
12
lymphoblastoid cell line
12
neuroblastoma cell
11
gastric cancer cell
10
Rhabdomyosarcoma
9
HeLa-S3
9
liposarcoma
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
diffuse intrinsic pontine glioma
8
fibroblast cell line
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
HL-60
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
SK-N-SH
7
WERI-Rb-1
7
induced pluripotent stem cell
7
melanoma
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY7
6
PC-3
6
PC-9
6
RPMI8226
6
RWPE1
6
Rh-4 cell
6
SW480
6
WI38
6
acute myeloid leukemia
6
endometrium adenocarcinoma
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
immortal human breast epithelial cell line cell
6
prostate cancer cell line
6
squamous cell lung carcinoma
5
Chondroid Chordoma
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
OCI-LY1
5
RS4-11 cell
5
SJSA1
5
T47D
5
dermal fibroblast
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
glioblastoma cell
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
A172
4
ACHN
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
H4
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
L1-S8
4
M059J
4
Mantle cell lymphoma
4
NB4
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY3
4
PANC-1 cell
4
RCC 7860
4
RKO
4
RPMI7951
4
SAEC
4
SJCRH30
4
SK-MEL-5
4
SK-N-SH_RA
4
T-47D cell
4
Tumor-derived cell line
4
U-266 cell
4
U-87 MG
4
U2OS
4
VCaP cell
4
WI-38 cell
4
cardiac muscle cell
4
esophageal epithelial cell
4
glioma cell
4
immortal neural cell line cell
4
keratinocyte
4
lung fibroblast cell line
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
4
smooth muscle cell of the coronary artery
3
786-O cell
3
A-673 cell
3
A673
3
ACC112
3
AG08396 cell
3
C4-2B
3
COLO-320 cell
3
D341 Med cell
3
DND-41
3
DND-41 cell
3
DOHH2
3
ECC-1
3
EH
3
EL
3
ELF-1
3
ELR
3
G-401 cell
3
G401
3
GM03348
3
GM10847
3
GM12801
3
GM12872
3
GM12874
3
GM13976
3
GM13977
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM20000
3
GM23338
3
H54
3
HCT116
3
HEK293-T-REx cell
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HeLa cell
3
KMS-11
3
KOPT-K1
3
Kasumi-1
3
L1-S8R
3
Loucy
3
MCF 10A
3
MCF10A-Er-Src cell
3
MDA-MB-231 cell
3
MOLM-13 cell
3
Myoblasts
3
NB-4 cell
3
NCCIT cell
3
NCI-H226 cell
3
NCI-H460 cell
3
NCI-H929
3
NHBE cell
Life stage
2
child
Date released
3
February, 2021
2
September, 2022
Software used
3
macs
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
Showing 5 of 5 results
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Download
FileSet
DSR948RQZ
released
Annotation file set
: Candidate regulatory elements for BSS00760 lymphocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR345WMU
released
Annotation file set
: Chromatin states for BSS00760 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR742UJN
released
Annotation file set
: Histone modifications annotation for Blood RPCI-WM1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR142ASL
released
Annotation file set
: Histone modifications annotation for Blood Pfeiffer from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR633TVW
released
Annotation file set
: Binding sites annotation for Blood Pfeiffer from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP