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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
0
cell line
Biosample term
105
monocyte
43
A549
42
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
28
B cell
23
CD4-positive, alpha-beta memory T cell
20
MCF-7
20
breast cancer cell
18
K562
18
endothelial cell
18
fibroblast
16
foreskin fibroblast
15
CD8-positive, alpha-beta memory T cell
15
T cell
15
foreskin keratinocyte
15
hepatocyte
15
keratinocyte
15
macrophage
14
HepG2
14
endothelial cell of umbilical vein
14
regulatory T cell
13
mononuclear cell
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
osteoblast
12
pericyte cell
12
skeletal muscle myoblast
11
T-helper 1 cell
11
astrocyte
11
bronchial epithelial cell
11
endothelial cell of hepatic sinusoid
11
excitatory neuron
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
natural killer cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
T-helper 17 cell
10
T-helper 2 cell
10
gastric cancer cell
9
HeLa-S3
9
liposarcoma
9
neurosphere
9
pancreatic ductal cell
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
choroid plexus epithelial cell
8
fibroblast of dermis
8
pancreatic beta cell
8
skeletal muscle satellite cell
8
smooth muscle cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
HL-60
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
SK-N-SH
7
acute myeloid leukemia
7
cardiac muscle cell
7
dermis blood vessel endothelial cell
7
diffuse intrinsic pontine glioma
7
epithelial cell of prostate
7
erythroblast
7
fibroblast cell line
7
hepatic stellate cell
7
kidney tubule cell
7
mammary gland epithelial cell
7
mature neutrophil
7
retinal pigment epithelial cell
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
GM12875
6
GM19240
6
GM23248
6
H1-hESC
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY7
6
PC-3
6
PC-9
6
RPMI8226
6
RWPE1
6
Rh-4 cell
6
SW480
6
WERI-Rb-1
6
WI38
6
dermis lymphatic vessel endothelial cell
6
fibroblast of villous mesenchyme
6
neutrophil
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
Chondroid Chordoma
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
OCI-LY1
5
RS4-11 cell
5
SJSA1
5
T47D
5
endometrium adenocarcinoma
5
esophageal adenocarcinoma
5
fibroblast of breast
5
fibroblast of pulmonary artery
5
glomerular visceral epithelial cell
5
immortal human breast epithelial cell line cell
5
lymphoblastoid cell line
5
myoepithelial cell of mammary gland
5
pancreatic acinar cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
4
A172
4
ACHN
4
B-lymphocyte
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
H4
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
Ishikawa
4
L1-S8
4
M059J
4
Mantle cell lymphoma
4
NB4
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY3
4
PANC-1 cell
4
RCC 7860
4
RKO
4
RPMI7951
4
SAEC
4
SJCRH30
4
SK-MEL-5
4
SK-N-SH_RA
4
T-47D cell
4
U-266 cell
4
U2OS
4
VCaP cell
4
WI-38 cell
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
colon epithelial cell
4
dermal fibroblast
4
esophageal squamous cell carcinoma
4
fibroblast of mammary gland
4
hESC cell
4
kidney epithelial cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
non-pigmented ciliary epithelial cell
4
osteosarcoma
4
pancreatic alpha cell
4
pancreatic delta cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
Organ
4
epithelium
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
1
chromhmm
1
encode-ccres
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR413BMO
released
Annotation file set
: Candidate regulatory elements for BSS01385 non-pigmented ciliary epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561UII
released
Annotation file set
: Chromatin states for BSS01385 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR622ULQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE non-pigmented ciliary epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR568ZXB
released
Annotation file set
: Accessible chromatin annotation for Others HNPCEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP