Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
0
primary cell
Biosample term
131
monocyte
64
HeLa-S3
62
A549
54
common myeloid progenitor, CD34-positive
53
H1-hESC
50
CD8-positive, alpha-beta T cell
41
K562
40
B cell
39
endothelial cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
macrophage
31
CD14-positive monocyte
30
fibroblast
28
regulatory T cell
26
MCF-7
23
EndoC_BH1
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
pericyte cell
21
T cell
21
T-helper 17 cell
21
keratinocyte
21
natural killer cell
20
breast cancer cell
20
mononuclear cell
20
pancreatic ductal cell
20
smooth muscle cell
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
foreskin keratinocyte
18
pancreatic beta cell
18
trophoblast cell
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
osteoblast
17
pancreatic alpha cell
16
GM12878
16
H9
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
pancreatic acinar cell
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
pancreatic delta cell
15
skeletal muscle myoblast
13
bronchial epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
epithelial cell of prostate
11
erythroblast
11
excitatory neuron
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
hepatic stellate cell
10
lymphocyte
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
cardiac muscle cell
9
liposarcoma
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
retinal pigment epithelial cell
8
skeletal muscle fiber
8
skin fibroblast
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LHCN-M2
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
PC-9
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
fibroblast of pulmonary artery
7
mature neutrophil
7
memory B cell
7
mesenchymal stem cell
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
NT2-D1 cell
6
OCI-LY1
6
PC-3
6
SJSA1
6
SW480
6
WI38
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
iPSC derived cell line
6
induced pluripotent stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
A172
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Ewing sarcoma
5
Fibroblast
5
GM04503
5
GM04504
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
L1-S8
5
Lymphatic Endothelial Cell
5
Monocyte
5
Myofibroblast
5
NB4
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
OCI-LY3
5
RWPE1
5
acute myeloid leukemia
5
enterocyte
5
esophageal adenocarcinoma
5
glutamatergic neuron
5
mast cell
5
mesangial cell
5
non-pigmented ciliary epithelial cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
skeletal muscle cell
Disease term
3
acute promyelocytic leukemia
Organ
5
blood
5
bodily fluid
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
October, 2022
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
kidney
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR821HQD
released
Annotation file set
: Binding sites annotation for NB4 (NB4) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR222KEP
released
Annotation file set
: Candidate regulatory elements for BSS01356 NB4 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769BYA
released
Annotation file set
: Target gene predictions for BSS01356 NB4 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR559QPK
released
Annotation file set
: Chromatin states for BSS01356 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR756FYR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE NB4
Lab:
AMP-T2D consortium
Project:
AMP