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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
accessible chromatin
1
gene expression
Annotation Category
4
Target gene links
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
ChIP-seq
11
DNase-seq
6
ATAC-seq
4
H3K27ac ChIP-Seq
1
RNA-seq
Available data
7
bed bed3+
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
4
primary cell
Biosample term
18
neural progenitor cell
11
cardiomyocytes
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
adipocyte
8
cardiomyocytes (cardiac muscle cell)
7
embryonic stem cell
6
cardiac precursors (cardiac muscle cell)
6
dendritic cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
hepatocyte(AFP)
3
pancreatic ductal cell
2
B cell
2
adipose-derived stem cell
2
bipolar neuron
2
differentiating adipose-derived stem cell
2
excitatory neuron
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
mesenchymal stem cell
2
mesendoderm
2
neuronal stem cell
1
Adipose SGBS cell line (adipocyte)
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell
1
erythroid cell
1
foreskin keratinocyte
1
foreskin melanocyte
1
iPS DF 4.7 Cell Line
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
mammary gland epithelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
myocyte
1
myotube
1
natural killer cell
1
neuron cell of Hypothalamus (neuron)
1
olfactory neurosphere cell line
1
renal cell carcinoma
1
skeletal muscle myoblast
1
skin fibroblast
1
smooth muscle cell
1
stem cell
1
trophoblast cell
1
white adipose cell
Organ
8
connective tissue
Life stage
1
adult
Date released
4
May, 2021
1
February, 2021
1
February, 2024
1
June, 2020
1
November, 2022
October, 2019
Software used
4
abc
3
macs
1
r
Lab
4
AMP-T2D consortium
4
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
October, 2019
annotation_type_category!
ChIP-seq
Showing 8 of 8 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP