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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
1
snATAC-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
51
CD8-positive, alpha-beta T cell
47
neural progenitor cell
44
B cell
43
hematopoietic multipotent progenitor cell
40
endothelial cell
37
hepatocyte
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
fibroblast
28
macrophage
28
regulatory T cell
27
adipocyte
25
smooth muscle cell
23
T cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
natural killer cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
pancreatic ductal cell
22
pericyte cell
21
T-helper 17 cell
21
glomerular endothelial cell
20
endothelial cell of umbilical vein
20
mononuclear cell
18
mesenchymal stem cell
18
pancreatic beta cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
osteoblast
17
pancreatic alpha cell
17
skeletal muscle myoblast
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
mammary gland epithelial cell
16
pancreatic acinar cell
16
pancreatic delta cell
16
retinal pigment epithelial cell
15
CD4-positive, alpha-beta T cell
15
embryonic stem cell
15
neutrophil
14
cardiac muscle cell
14
excitatory neuron
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
cardiomyocytes
11
erythroblast
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
neuronal stem cell
10
skin fibroblast
9
epithelial cell of prostate
9
extended pluripotent stem (EPS) cells
9
foreskin melanocyte
9
hepatic stellate cell
9
induced pluripotent stem cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
progenitor cell of endocrine pancreas
9
skeletal muscle fiber
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
endodermal cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
mesendoderm
8
myoepithelial cell of mammary gland
8
neuroblastoma cell line
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
choroid plexus epithelial cell
7
dendritic cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
mesodermal cell
7
neural cell
7
pulmonary artery endothelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
gamma-delta T cell
6
mast cell
6
muscle cell
6
naive B cell
6
neuron
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
5
Th1 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
cardiac fibroblast
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
Life stage
5
embryonic
Date released
3
September, 2022
2
February, 2021
2
February, 2024
Software used
3
r
2
encode-ccres
1
chromhmm
1
deeptools
1
macs
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
Project
7
AMP
RFA
5
AMP
2
AMP2
Showing 7 of 7 results
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Download
FileSet
DSR481YGC
released
Annotation file set
: Candidate regulatory elements for BSS01366 neural cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR174BSF
released
Annotation file set
: Target gene predictions for BSS01366 neural cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR628HIW
released
Annotation file set
: Chromatin states for BSS01366 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR770IYJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR777CTL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR025YBG
released
Annotation file set
: Cell type chromatin broad peaks and bw of neural cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR811PAV
released
Annotation file set
: Cell type gene expression mean TPM and bw of neural cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP