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Schema
Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
0
tissue
Biosample term
66
heart
65
stomach
58
kidney
52
brain
51
muscle of arm
50
lung
47
small intestine
46
adrenal gland
45
placenta
43
large intestine
43
muscle of leg
41
muscle of back
39
left lung
37
thymus
35
retina
34
neural progenitor cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
renal cortex interstitium
31
renal pelvis
31
right kidney
27
left kidney
26
spleen
24
heart left ventricle
23
spinal cord
20
adipocyte
20
adipose tissue
20
pigmented layer of retina
19
pancreas
18
sigmoid colon
16
islet of Langerhans
16
psoas muscle
15
ovary
14
body of pancreas
14
gastrocnemius medialis
14
thyroid gland
14
tibial nerve
14
transverse colon
13
heart right ventricle
13
muscle of trunk
13
testis
13
upper lobe of left lung
12
caudate nucleus
12
chorionic villus
12
coronary artery
12
layer of hippocampus
11
Peyer's patch
11
endocrine pancreas
11
prostate gland
10
left cardiac atrium
10
left renal pelvis
10
right atrium auricular region
10
right renal pelvis
10
skeletal muscle tissue
10
tibial artery
9
breast epithelium
9
esophagus squamous epithelium
9
left renal cortex interstitium
9
mesenchymal stem cell
9
omental fat pad
9
substantia nigra
9
temporal lobe
9
trophoblast
8
T-cell acute lymphoblastic leukemia
8
aorta
8
ascending aorta
8
colonic mucosa
8
embryonic stem cell
8
esophagus muscularis mucosa
8
lower leg skin
8
neuroblastoma cell line
8
neuronal stem cell
8
right renal cortex interstitium
8
thoracic aorta
7
cerebellum
7
chorion membrane
7
cingulate gyrus
7
duodenal mucosa
7
esophagus
7
eye
7
frontal cortex
7
mesendoderm
7
mucosa of rectum
7
parathyroid adenoma
7
stomach smooth muscle
7
subcutaneous adipose tissue
7
tongue
6
Ammon's horn
6
angular gyrus
6
cardiac muscle cell
6
dendritic cell
6
endodermal cell
6
gastroesophageal sphincter
6
globus pallidus
6
limb
6
mesodermal cell
6
midbrain
6
muscle layer of colon
6
muscle layer of duodenum
6
occipital lobe
6
putamen
6
retinal pigment epithelial cell
6
subcutaneous abdominal adipose tissue
6
urinary bladder
6
uterus
6
vagina
5
SGBS preadipocytes
5
bipolar neuron
5
chondrocyte
5
superior temporal gyrus
5
umbilical cord
4
B cell
4
Brodmann (1909) area 46
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellar cortex
4
colon adenocarcinoma
4
medulla oblongata
4
middle frontal gyrus
4
muscle cell
4
neural cell
4
pons
4
rhabdomyosarcoma cell
4
right cardiac atrium
4
trophoblast cell
3
amnion
3
cortex of kidney
3
ectodermal cell
3
embryonic facial prominence
3
esophageal adenocarcinoma
3
femur
3
foreskin keratinocyte
3
foreskin melanocyte
3
germinal matrix
3
hepatocyte
3
iPS DF 4.7 Cell Line
3
inferior parietal cortex
3
islet precursor cell
3
mammary gland epithelial cell
3
mucosa of stomach
3
neuron
3
olfactory neurosphere cell line
3
pancreatic ductal adenocarcinoma
3
prefrontal cortex
3
rectum smooth muscle tissue
3
right lobe of liver
3
smooth muscle cell
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
BICR 31
2
CD4-positive helper T cell
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
T-lymphoma cell line
2
Th1 cell
2
adipose-derived stem cell
2
arm bone
2
atypical teratoid rhabdoid tumor
2
breast carcinoma
2
cardiac mesoderm primordium
2
cardiac myoblast
2
cardiac precursors (cardiac muscle cell)
2
cardiovascular progenitor cell
2
cartilage tissue
2
chorion
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
endometrium cancer
2
epidermal stem cell
2
erythroid progenitor cell
2
fibroblast
2
first pancreatic bud
2
forelimb muscle
2
germinal center
2
kidney epithelium
2
leg bone
2
lymphocyte of B lineage (iPSC)
2
mammary gland
2
medulloblastoma cell line
2
middle frontal area 46
2
myotube
2
natural killer cell
2
neuroepithelial stem cell
2
osteosarcoma
2
pancreatic ductal cell
2
pancreatic stellate cell
2
placental basal plate
2
respiratory system smooth muscle
2
skin of body
2
skin of forearm
2
skin of prepuce of penis
2
tissue
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR409USF
released
Annotation file set
: Candidate regulatory elements for BSS00758 islet precursor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR664STB
released
Annotation file set
: Target gene predictions for BSS00758 islet precursor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR635HDH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE islet precursor cell
Lab:
AMP-T2D consortium
Project:
AMP