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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
accessible chromatin
3
candidate regulatory elements
3
chromatin state
2
eQTL
2
target gene predictions
2
variant allelic effects
1
gene expression
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
1
RNA-seq
Available data
3
bed bed9
1
bigBed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
0
in vitro differentiated cells
Biosample term
24
heart
23
kidney
20
stomach
19
brain
17
lung
16
muscle of arm
15
adrenal gland
15
muscle of leg
15
small intestine
14
islet of Langerhans
14
placenta
13
large intestine
13
left lung
13
muscle of back
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
11
right lung
11
thymus
10
liver
10
right kidney
9
adipose tissue
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
7
adipocyte
7
left cardiac atrium
7
spinal cord
7
spleen
6
body of pancreas
6
heart right ventricle
6
subcutaneous adipose tissue
6
temporal lobe
6
tibial nerve
5
aorta
5
caudate nucleus
5
embryonic stem cell
5
ovary
5
sigmoid colon
4
angular gyrus
4
ascending aorta
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
frontal cortex
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
omental fat pad
4
psoas muscle
4
retina
4
right atrium auricular region
4
right cardiac atrium
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial artery
4
transverse colon
3
Peyer's patch
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
hepatocyte(AFP)
3
mucosa of rectum
3
pancreas
3
pancreatic ductal cell
3
stomach smooth muscle
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
Ammon's horn
2
Brodmann (1909) area 46
2
breast epithelium
2
endodermal cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mesenchymal stem cell
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
prostate gland
2
putamen
2
rectum smooth muscle tissue
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
smooth muscle cell
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
2
visceral abdominal adipose tissue
1
C1 segment of cervical spinal cord
1
amnion
1
amygdala
1
anterior cingulate cortex
1
aortic valve
1
arm bone
1
bipolar neuron
1
bladder
1
breast - mammary tissue
1
cardiac fibroblast
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
diencephalon
1
dorsolateral prefrontal cortex
1
ectodermal cell
1
embryonic facial prominence
1
endothelial cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
excitatory neuron
1
fallopian tube
1
femur
1
gastrocnemius medialis(Muscle - Skeletal)
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
hepatocyte
1
hippocampal neuron
1
hypothalamus
1
inferior parietal cortex
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
kidney - cortex
1
kidney - medulla
1
left ventricle myocardium
1
leg bone
1
lower motor neuron
1
medulla oblongata
1
mesendoderm
1
mesodermal cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
metanephros
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
mitral valve
1
mucosa of stomach
1
neural cell
1
neuron
1
nucleus accumbens
1
olfactory neurosphere cell line
1
parietal lobe
1
pituitary
1
pons
1
prostate
1
pulmonary valve
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of body
1
small intestine - terminal Ileum
1
stem cell
1
subcutaneous abdominal adipose tissue
1
superior temporal gyrus
1
thyroid
1
tricuspid valve
1
trophoblast cell
1
umbilical cord
1
whole blood
Organ
4
artery
4
blood vessel
4
limb
4
vasculature
Life stage
4
adult
Date released
2
September, 2022
1
January, 2020
1
May, 2020
Software used
3
chromhmm
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR520FED
released
Annotation file set
: Chromatin states for BSS01838 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ACD
released
Annotation file set
: Chromatin states for BSS01837 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976UYN
released
Annotation file set
: Gene expression summary of TPM of artery tibial from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR157HZX
released
Annotation file set
: ChromHMM 18-state model for tibial artery from 26 ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP